Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4260457-4604424

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssh3 19 4261668 to 4269172 7504 - protein coding gene slingshot protein phosphatase 3
Tssr5406 19 4262516 to 4262517 1 + TSS region transcription start site region 5406
Mir6985 19 4263818 to 4263878 60 - miRNA gene microRNA 6985
Cpgi10395 19 4268741 to 4269442 701 CpG island CpG island 10395
Tssr157475 19 4269078 to 4269126 48 - TSS region transcription start site region 157475
Tssr157476 19 4269140 to 4269200 60 - TSS region transcription start site region 157476
Tssr157477 19 4269218 to 4269238 20 - TSS region transcription start site region 157477
Tssr157478 19 4269239 to 4269292 53 - TSS region transcription start site region 157478
Ankrd13d 19 4270180 to 4283137 12957 - protein coding gene ankyrin repeat domain 13 family, member D
Cpgi10396 19 4282619 to 4283490 871 CpG island CpG island 10396
Tssr157479 19 4283085 to 4283142 57 - TSS region transcription start site region 157479
Grk2 19 4286001 to 4306222 20221 - protein coding gene G protein-coupled receptor kinase 2
Tssr154313 19 4295623 to 4295629 6 + TSS region transcription start site region 154313
Tssr154314 19 4300614 to 4300625 11 + TSS region transcription start site region 154314
Tssr154315 19 4300626 to 4300643 17 + TSS region transcription start site region 154315
Tssr154316 19 4302519 to 4302546 27 + TSS region transcription start site region 154316
Cpgi10397 19 4305522 to 4306797 1275 CpG island CpG island 10397
Tssr157480 19 4306010 to 4306044 34 - TSS region transcription start site region 157480
Tssr157481 19 4306215 to 4306369 154 - TSS region transcription start site region 157481
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Tssr157482 19 4318695 to 4318710 15 - TSS region transcription start site region 157482
Tssr157483 19 4321553 to 4321563 10 - TSS region transcription start site region 157483
Tssr157484 19 4333194 to 4333200 6 - TSS region transcription start site region 157484
Cpgi10398 19 4333803 to 4334072 269 CpG island CpG island 10398
Tssr157485 19 4333840 to 4333972 132 - TSS region transcription start site region 157485
Tssr157486 19 4334016 to 4334031 15 - TSS region transcription start site region 157486
Tssr157487 19 4377360 to 4377364 4 - TSS region transcription start site region 157487
Tssr157488 19 4388198 to 4388203 5 - TSS region transcription start site region 157488
Tssr157489 19 4394643 to 4394647 4 - TSS region transcription start site region 157489
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
Tssr154317 19 4396484 to 4396497 13 + TSS region transcription start site region 154317
Tssr157490 19 4397052 to 4397098 46 - TSS region transcription start site region 157490
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491
Tssr157492 19 4439388 to 4439450 62 - TSS region transcription start site region 157492
Tssr154318 19 4439511 to 4439539 28 + TSS region transcription start site region 154318
Tssr157493 19 4440398 to 4440409 11 - TSS region transcription start site region 157493
Tssr157494 19 4440447 to 4440458 11 - TSS region transcription start site region 157494
Syt12 19 4445908 to 4477143 31235 - protein coding gene synaptotagmin XII
Cpgi10401 19 4476248 to 4477511 1263 CpG island CpG island 10401
Tssr157495 19 4477119 to 4477161 42 - TSS region transcription start site region 157495
Tssr157496 19 4477567 to 4477592 25 - TSS region transcription start site region 157496
2010003K11Rik 19 4496790 to 4498583 1793 - protein coding gene RIKEN cDNA 2010003K11 gene
Tssr157497 19 4498399 to 4498410 11 - TSS region transcription start site region 157497
Tssr157498 19 4498532 to 4498543 11 - TSS region transcription start site region 157498
Tssr157499 19 4498547 to 4498572 25 - TSS region transcription start site region 157499
Tssr157500 19 4498574 to 4498596 22 - TSS region transcription start site region 157500
Tssr157501 19 4498603 to 4498614 11 - TSS region transcription start site region 157501
Cpgi10402 19 4509839 to 4511261 1422 CpG island CpG island 10402
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154319 19 4510480 to 4510487 7 + TSS region transcription start site region 154319
Tssr154320 19 4510498 to 4510508 10 + TSS region transcription start site region 154320
Tssr154321 19 4510510 to 4510532 22 + TSS region transcription start site region 154321
Tssr154322 19 4510536 to 4510552 16 + TSS region transcription start site region 154322
Tssr154323 19 4517781 to 4517811 30 + TSS region transcription start site region 154323
Tssr154324 19 4558007 to 4558011 4 + TSS region transcription start site region 154324
Tssr154325 19 4558808 to 4558816 8 + TSS region transcription start site region 154325
Tssr154326 19 4594312 to 4594332 20 + TSS region transcription start site region 154326
Tssr154327 19 4594337 to 4594361 24 + TSS region transcription start site region 154327
Tssr154328 19 4594363 to 4594394 31 + TSS region transcription start site region 154328
Tssr154329 19 4594398 to 4594422 24 + TSS region transcription start site region 154329
Tssr5407 19 4601665 to 4601681 16 + TSS region transcription start site region 5407
Tssr154330 19 4603074 to 4603079 5 + TSS region transcription start site region 154330
Tssr154331 19 4603090 to 4603102 12 + TSS region transcription start site region 154331
Tssr154332 19 4603126 to 4603145 19 + TSS region transcription start site region 154332