Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4139238-4298490

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cabp4 19 4135425 to 4139609 4184 - protein coding gene calcium binding protein 4
Tssr157455 19 4139562 to 4139580 18 - TSS region transcription start site region 157455
Tssr157456 19 4139605 to 4139613 8 - TSS region transcription start site region 157456
Tssr157457 19 4139625 to 4139630 5 - TSS region transcription start site region 157457
Gpr152 19 4139799 to 4145738 5939 + protein coding gene G protein-coupled receptor 152
Tssr154277 19 4140290 to 4140321 31 + TSS region transcription start site region 154277
Cpgi10386 19 4148435 to 4149172 737 CpG island CpG island 10386
Tssr154278 19 4148616 to 4148666 50 + TSS region transcription start site region 154278
Coro1b 19 4148619 to 4154035 5416 + protein coding gene coronin, actin binding protein 1B
Tssr154279 19 4148684 to 4148697 13 + TSS region transcription start site region 154279
Tssr154280 19 4150480 to 4150527 47 + TSS region transcription start site region 154280
Tssr154281 19 4151576 to 4151588 12 + TSS region transcription start site region 154281
Tssr154282 19 4151664 to 4151683 19 + TSS region transcription start site region 154282
Tssr154283 19 4153362 to 4153402 40 + TSS region transcription start site region 154283
Tssr154284 19 4153658 to 4153672 14 + TSS region transcription start site region 154284
Tssr154285 19 4153704 to 4153773 69 + TSS region transcription start site region 154285
Tssr154286 19 4154620 to 4154629 9 + TSS region transcription start site region 154286
Tssr154287 19 4154640 to 4154668 28 + TSS region transcription start site region 154287
Ptprcap 19 4154646 to 4156710 2064 + protein coding gene protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
Tssr154288 19 4156100 to 4156111 11 + TSS region transcription start site region 154288
Cpgi10387 19 4156179 to 4156434 255 CpG island CpG island 10387
Tssr157458 19 4156579 to 4156618 39 - TSS region transcription start site region 157458
Tssr154289 19 4156586 to 4156607 21 + TSS region transcription start site region 154289
Rps6kb2 19 4156792 to 4163387 6595 - protein coding gene ribosomal protein S6 kinase, polypeptide 2
Cpgi10388 19 4163066 to 4163516 450 CpG island CpG island 10388
Tssr157459 19 4163287 to 4163338 51 - TSS region transcription start site region 157459
Tssr157460 19 4163347 to 4163358 11 - TSS region transcription start site region 157460
Carns1 19 4164324 to 4175479 11155 - protein coding gene carnosine synthase 1
Cpgi10389 19 4169343 to 4170254 911 CpG island CpG island 10389
Gm17552 19 4169566 to 4174284 4718 + lincRNA gene predicted gene, 17552
Tssr154290 19 4171581 to 4171595 14 + TSS region transcription start site region 154290
Tssr157461 19 4175470 to 4175484 14 - TSS region transcription start site region 157461
Tssr5403 19 4180633 to 4180636 3 + TSS region transcription start site region 5403
Tssr154291 19 4180657 to 4180670 13 + TSS region transcription start site region 154291
Tssr157462 19 4181919 to 4181930 11 - TSS region transcription start site region 157462
Tbc1d10c 19 4184358 to 4191047 6689 - protein coding gene TBC1 domain family, member 10c
Tssr157463 19 4186111 to 4186123 12 - TSS region transcription start site region 157463
Tssr157464 19 4188756 to 4188761 5 - TSS region transcription start site region 157464
Tssr157465 19 4190959 to 4190976 17 - TSS region transcription start site region 157465
Tssr157466 19 4190985 to 4191029 44 - TSS region transcription start site region 157466
Tssr157467 19 4191035 to 4191069 34 - TSS region transcription start site region 157467
Tssr157468 19 4191076 to 4191083 7 - TSS region transcription start site region 157468
Cpgi10390 19 4191616 to 4192850 1234 CpG island CpG island 10390
Tssr154292 19 4192120 to 4192125 5 + TSS region transcription start site region 154292
Tssr154293 19 4192129 to 4192217 88 + TSS region transcription start site region 154293
Ppp1ca 19 4192174 to 4195419 3245 + protein coding gene protein phosphatase 1 catalytic subunit alpha
Tssr154294 19 4193101 to 4193130 29 + TSS region transcription start site region 154294
Tssr154295 19 4194622 to 4194647 25 + TSS region transcription start site region 154295
Tssr154296 19 4195028 to 4195057 29 + TSS region transcription start site region 154296
Rad9a 19 4195198 to 4201603 6405 - protein coding gene RAD9 checkpoint clamp component A
Cpgi10391 19 4201227 to 4201974 747 CpG island CpG island 10391
Tssr157469 19 4201375 to 4201425 50 - TSS region transcription start site region 157469
Tssr157470 19 4201571 to 4201589 18 - TSS region transcription start site region 157470
Tssr157471 19 4201591 to 4201623 32 - TSS region transcription start site region 157471
Gm30082 19 4201706 to 4203240 1534 + lncRNA gene predicted gene, 30082
Tssr154297 19 4201797 to 4201816 19 + TSS region transcription start site region 154297
Tssr154298 19 4204194 to 4204207 13 + TSS region transcription start site region 154298
Tssr154299 19 4204211 to 4204221 10 + TSS region transcription start site region 154299
Cpgi10392 19 4214154 to 4215713 1559 CpG island CpG island 10392
Clcf1 19 4214238 to 4223490 9252 + protein coding gene cardiotrophin-like cytokine factor 1
Gm45928 19 4214238 to 4233634 19396 + lncRNA gene predicted gene, 45928
Tssr154300 19 4214351 to 4214363 12 + TSS region transcription start site region 154300
Tssr154301 19 4214367 to 4214375 8 + TSS region transcription start site region 154301
Tssr154302 19 4214383 to 4214397 14 + TSS region transcription start site region 154302
Tssr154303 19 4214416 to 4214432 16 + TSS region transcription start site region 154303
Gm26115 19 4215402 to 4215488 86 - miRNA gene predicted gene, 26115
Tssr154304 19 4215832 to 4215847 15 + TSS region transcription start site region 154304
Tssr157472 19 4216095 to 4216110 15 - TSS region transcription start site region 157472
Tssr5404 19 4231612 to 4231657 45 - TSS region transcription start site region 5404
Cpgi10393 19 4231726 to 4231937 211 CpG island CpG island 10393
Pold4 19 4231899 to 4233631 1732 + protein coding gene polymerase (DNA-directed), delta 4
Tssr154305 19 4231910 to 4231928 18 + TSS region transcription start site region 154305
Tssr154306 19 4231931 to 4231959 28 + TSS region transcription start site region 154306
Tssr154307 19 4231961 to 4231977 16 + TSS region transcription start site region 154307
Tssr154308 19 4231989 to 4232000 11 + TSS region transcription start site region 154308
Tssr154309 19 4232408 to 4232425 17 + TSS region transcription start site region 154309
Tssr154310 19 4232435 to 4232479 44 + TSS region transcription start site region 154310
Tssr154311 19 4232783 to 4232804 21 + TSS region transcription start site region 154311
Tssr154312 19 4237020 to 4237021 1 + TSS region transcription start site region 154312
Tssr5405 19 4238785 to 4238788 3 + TSS region transcription start site region 5405
Cpgi10394 19 4257211 to 4258017 806 CpG island CpG island 10394
Tssr157473 19 4257604 to 4257611 7 - TSS region transcription start site region 157473
Tssr157474 19 4257623 to 4257644 21 - TSS region transcription start site region 157474
Ssh3 19 4261668 to 4269172 7504 - protein coding gene slingshot protein phosphatase 3
Tssr5406 19 4262516 to 4262517 1 + TSS region transcription start site region 5406
Mir6985 19 4263818 to 4263878 60 - miRNA gene microRNA 6985
Cpgi10395 19 4268741 to 4269442 701 CpG island CpG island 10395
Tssr157475 19 4269078 to 4269126 48 - TSS region transcription start site region 157475
Tssr157476 19 4269140 to 4269200 60 - TSS region transcription start site region 157476
Tssr157477 19 4269218 to 4269238 20 - TSS region transcription start site region 157477
Tssr157478 19 4269239 to 4269292 53 - TSS region transcription start site region 157478
Ankrd13d 19 4270180 to 4283137 12957 - protein coding gene ankyrin repeat domain 13 family, member D
Cpgi10396 19 4282619 to 4283490 871 CpG island CpG island 10396
Tssr157479 19 4283085 to 4283142 57 - TSS region transcription start site region 157479
Grk2 19 4286001 to 4306222 20221 - protein coding gene G protein-coupled receptor kinase 2
Tssr154313 19 4295623 to 4295629 6 + TSS region transcription start site region 154313