Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 19:4085423-4194033

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83 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cabp2 19 4081578 to 4087340 5762 + protein coding gene calcium binding protein 2
Cpgi10382 19 4096535 to 4097960 1425 CpG island CpG island 10382
Tssr154261 19 4096880 to 4096945 65 + TSS region transcription start site region 154261
Cdk2ap2 19 4097182 to 4099019 1837 + protein coding gene CDK2-associated protein 2
Tssr154262 19 4097337 to 4097356 19 + TSS region transcription start site region 154262
Tssr154263 19 4097369 to 4097386 17 + TSS region transcription start site region 154263
Tssr154264 19 4097392 to 4097415 23 + TSS region transcription start site region 154264
Tssr154265 19 4097422 to 4097432 10 + TSS region transcription start site region 154265
Tssr154266 19 4097445 to 4097451 6 + TSS region transcription start site region 154266
Tssr154267 19 4097678 to 4097713 35 + TSS region transcription start site region 154267
Tssr154268 19 4097800 to 4097809 9 + TSS region transcription start site region 154268
Cpgi10383 19 4099913 to 4101492 1579 CpG island CpG island 10383
Pitpnm1 19 4099998 to 4113965 13967 + protein coding gene phosphatidylinositol transfer protein, membrane-associated 1
Tssr154269 19 4100000 to 4100083 83 + TSS region transcription start site region 154269
Tssr154270 19 4100936 to 4100987 51 + TSS region transcription start site region 154270
Tssr154271 19 4101005 to 4101008 3 + TSS region transcription start site region 154271
Tssr154272 19 4104421 to 4104423 2 + TSS region transcription start site region 154272
Tssr154273 19 4113389 to 4113408 19 + TSS region transcription start site region 154273
Aip 19 4114446 to 4125858 11412 - protein coding gene aryl-hydrocarbon receptor-interacting protein
Tssr157446 19 4118510 to 4118529 19 - TSS region transcription start site region 157446
Cpgi10384 19 4121112 to 4121689 577 CpG island CpG island 10384
Tssr157447 19 4121438 to 4121486 48 - TSS region transcription start site region 157447
Tssr157448 19 4121536 to 4121581 45 - TSS region transcription start site region 157448
Tssr157449 19 4124558 to 4124570 12 - TSS region transcription start site region 157449
Cpgi10385 19 4125668 to 4126521 853 CpG island CpG island 10385
Tssr157450 19 4125765 to 4125813 48 - TSS region transcription start site region 157450
Tssr157451 19 4125820 to 4125831 11 - TSS region transcription start site region 157451
Tssr157452 19 4125837 to 4125863 26 - TSS region transcription start site region 157452
Tssr157453 19 4125865 to 4125895 30 - TSS region transcription start site region 157453
Tssr154274 19 4125946 to 4125999 53 + TSS region transcription start site region 154274
Tmem134 19 4125960 to 4132307 6347 + protein coding gene transmembrane protein 134
Tssr154275 19 4126008 to 4126021 13 + TSS region transcription start site region 154275
Tssr154276 19 4126040 to 4126057 17 + TSS region transcription start site region 154276
Tssr157454 19 4127266 to 4127286 20 - TSS region transcription start site region 157454
Cabp4 19 4135423 to 4144033 8610 - protein coding gene calcium binding protein 4
Tssr157455 19 4139562 to 4139580 18 - TSS region transcription start site region 157455
Tssr157456 19 4139605 to 4139613 8 - TSS region transcription start site region 157456
Tssr157457 19 4139625 to 4139630 5 - TSS region transcription start site region 157457
Gpr152 19 4139799 to 4145741 5942 + protein coding gene G protein-coupled receptor 152
Tssr154277 19 4140290 to 4140321 31 + TSS region transcription start site region 154277
Cpgi10386 19 4148435 to 4149172 737 CpG island CpG island 10386
Tssr154278 19 4148616 to 4148666 50 + TSS region transcription start site region 154278
Coro1b 19 4148619 to 4154035 5416 + protein coding gene coronin, actin binding protein 1B
Tssr154279 19 4148684 to 4148697 13 + TSS region transcription start site region 154279
Tssr154280 19 4150480 to 4150527 47 + TSS region transcription start site region 154280
Tssr154281 19 4151576 to 4151588 12 + TSS region transcription start site region 154281
Tssr154282 19 4151664 to 4151683 19 + TSS region transcription start site region 154282
Tssr154283 19 4153362 to 4153402 40 + TSS region transcription start site region 154283
Tssr154284 19 4153658 to 4153672 14 + TSS region transcription start site region 154284
Tssr154285 19 4153704 to 4153773 69 + TSS region transcription start site region 154285
Tssr154286 19 4154620 to 4154629 9 + TSS region transcription start site region 154286
Tssr154287 19 4154640 to 4154668 28 + TSS region transcription start site region 154287
Ptprcap 19 4154646 to 4156710 2064 + protein coding gene protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
Tssr154288 19 4156100 to 4156111 11 + TSS region transcription start site region 154288
Cpgi10387 19 4156179 to 4156434 255 CpG island CpG island 10387
Tssr157458 19 4156579 to 4156618 39 - TSS region transcription start site region 157458
Tssr154289 19 4156586 to 4156607 21 + TSS region transcription start site region 154289
Rps6kb2 19 4156792 to 4163383 6591 - protein coding gene ribosomal protein S6 kinase, polypeptide 2
Cpgi10388 19 4163066 to 4163516 450 CpG island CpG island 10388
Tssr157459 19 4163287 to 4163338 51 - TSS region transcription start site region 157459
Tssr157460 19 4163347 to 4163358 11 - TSS region transcription start site region 157460
Carns1 19 4164324 to 4175479 11155 - protein coding gene carnosine synthase 1
Gm50230 19 4168742 to 4191047 22305 - lncRNA gene predicted gene, 50230
Cpgi10389 19 4169343 to 4170254 911 CpG island CpG island 10389
Gm17552 19 4169566 to 4174284 4718 + lncRNA gene predicted gene, 17552
Tssr154290 19 4171581 to 4171595 14 + TSS region transcription start site region 154290
Tssr157461 19 4175470 to 4175484 14 - TSS region transcription start site region 157461
Tssr5403 19 4180633 to 4180636 3 + TSS region transcription start site region 5403
Tssr154291 19 4180657 to 4180670 13 + TSS region transcription start site region 154291
Tssr157462 19 4181919 to 4181930 11 - TSS region transcription start site region 157462
Tbc1d10c 19 4184357 to 4191195 6838 - protein coding gene TBC1 domain family, member 10c
Tssr157463 19 4186111 to 4186123 12 - TSS region transcription start site region 157463
Tssr157464 19 4188756 to 4188761 5 - TSS region transcription start site region 157464
Tssr157465 19 4190959 to 4190976 17 - TSS region transcription start site region 157465
Tssr157466 19 4190985 to 4191029 44 - TSS region transcription start site region 157466
Tssr157467 19 4191035 to 4191069 34 - TSS region transcription start site region 157467
Tssr157468 19 4191076 to 4191083 7 - TSS region transcription start site region 157468
Cpgi10390 19 4191616 to 4192850 1234 CpG island CpG island 10390
Gm50251 19 4192109 to 4192782 673 - lncRNA gene predicted gene, 50251
Tssr154292 19 4192120 to 4192125 5 + TSS region transcription start site region 154292
Tssr154293 19 4192129 to 4192217 88 + TSS region transcription start site region 154293
Ppp1ca 19 4192174 to 4195419 3245 + protein coding gene protein phosphatase 1 catalytic subunit alpha
Tssr154294 19 4193101 to 4193130 29 + TSS region transcription start site region 154294