Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:38139655-38389703

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pde6c 19 38132781 to 38183955 51174 + protein coding gene phosphodiesterase 6C, cGMP specific, cone, alpha prime
Tssr156248 19 38162180 to 38162190 10 + TSS region transcription start site region 156248
Tssr156249 19 38162219 to 38162232 13 + TSS region transcription start site region 156249
Fra10ac1 19 38188481 to 38224138 35657 - protein coding gene FRA10AC1 homolog (human)
Cpgi10804 19 38223884 to 38224502 618 CpG island CpG island 10804
Tssr159129 19 38224065 to 38224095 30 - TSS region transcription start site region 159129
Tssr159130 19 38224096 to 38224183 87 - TSS region transcription start site region 159130
Tssr159131 19 38224705 to 38224719 14 - TSS region transcription start site region 159131
Gm32574 19 38257836 to 38260793 2957 - lncRNA gene predicted gene, 32574
Gm32491 19 38257928 to 38263285 5357 + lncRNA gene predicted gene, 32491
Gm32771 19 38264535 to 38272565 8030 - lncRNA gene predicted gene, 32771
Tssr156250 19 38264558 to 38264574 16 + TSS region transcription start site region 156250
Tssr156251 19 38264587 to 38264622 35 + TSS region transcription start site region 156251
Tssr156252 19 38264629 to 38264647 18 + TSS region transcription start site region 156252
Tssr156253 19 38264655 to 38264703 48 + TSS region transcription start site region 156253
Tssr156254 19 38264761 to 38264831 70 + TSS region transcription start site region 156254
Lgi1 19 38264782 to 38308939 44157 + protein coding gene leucine-rich repeat LGI family, member 1
Tssr156255 19 38264835 to 38264848 13 + TSS region transcription start site region 156255
Gm42723 19 38300083 to 38315270 15187 - antisense lncRNA gene predicted gene 42723
Gm9886 19 38311058 to 38327048 15990 - lncRNA gene predicted gene 9886
Tssr159132 19 38342646 to 38342654 8 - TSS region transcription start site region 159132
Gm32960 19 38348636 to 38350079 1443 + lncRNA gene predicted gene, 32960
Tssr156256 19 38348694 to 38348722 28 + TSS region transcription start site region 156256
Tssr156257 19 38348731 to 38348743 12 + TSS region transcription start site region 156257
Gm33036 19 38352239 to 38358506 6267 - lncRNA gene predicted gene, 33036
Tssr159133 19 38358476 to 38358480 4 - TSS region transcription start site region 159133
Tssr159134 19 38372506 to 38372520 14 - TSS region transcription start site region 159134
Gm41844 19 38379292 to 38381215 1923 + protein coding gene predicted gene, 41844
Gm18936 19 38387580 to 38388161 581 - pseudogene predicted gene, 18936