Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:22993279-24455034

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr155561 19 22994208 to 22994212 4 + TSS region transcription start site region 155561
C330002G04Rik 19 23037390 to 23075853 38463 - lincRNA gene RIKEN cDNA C330002G04 gene
Cpgi10681 19 23057444 to 23057623 179 CpG island CpG island 10681
Tssr158603 19 23058163 to 23058171 8 - TSS region transcription start site region 158603
Tssr158604 19 23058173 to 23058184 11 - TSS region transcription start site region 158604
Tssr155562 19 23061449 to 23061464 15 + TSS region transcription start site region 155562
Tssr155563 19 23061470 to 23061481 11 + TSS region transcription start site region 155563
Tssr155564 19 23061484 to 23061496 12 + TSS region transcription start site region 155564
Tssr155565 19 23061565 to 23061593 28 + TSS region transcription start site region 155565
Tssr158605 19 23075880 to 23075904 24 - TSS region transcription start site region 158605
Tssr158606 19 23087524 to 23087532 8 - TSS region transcription start site region 158606
Tssr155566 19 23087885 to 23087894 9 + TSS region transcription start site region 155566
Tssr155567 19 23087923 to 23087935 12 + TSS region transcription start site region 155567
Tssr155568 19 23090938 to 23090945 7 + TSS region transcription start site region 155568
Tssr158607 19 23092878 to 23092885 7 - TSS region transcription start site region 158607
Tssr158608 19 23093672 to 23093684 12 - TSS region transcription start site region 158608
Tssr158609 19 23093746 to 23093791 45 - TSS region transcription start site region 158609
Tssr155569 19 23093896 to 23093919 23 + TSS region transcription start site region 155569
Tssr155570 19 23096860 to 23096883 23 + TSS region transcription start site region 155570
Tssr158610 19 23132804 to 23132822 18 - TSS region transcription start site region 158610
Tssr155571 19 23133809 to 23133816 7 + TSS region transcription start site region 155571
Cpgi10682 19 23134143 to 23136447 2304 CpG island CpG island 10682
Tssr155572 19 23134493 to 23134498 5 + TSS region transcription start site region 155572
2410080I02Rik 19 23134900 to 23135717 817 + lincRNA gene RIKEN cDNA 2410080I02 gene
Tssr158611 19 23134935 to 23134961 26 - TSS region transcription start site region 158611
Tssr158612 19 23135017 to 23135034 17 - TSS region transcription start site region 158612
Tssr155573 19 23135110 to 23135130 20 + TSS region transcription start site region 155573
Tssr155574 19 23136087 to 23136097 10 + TSS region transcription start site region 155574
Tssr158613 19 23136171 to 23136176 5 - TSS region transcription start site region 158613
Tssr158614 19 23136261 to 23136271 10 - TSS region transcription start site region 158614
Tssr158615 19 23136277 to 23136303 26 - TSS region transcription start site region 158615
Tssr158616 19 23136365 to 23136383 18 - TSS region transcription start site region 158616
Tssr158617 19 23136484 to 23136501 17 - TSS region transcription start site region 158617
Tssr158618 19 23136524 to 23136535 11 - TSS region transcription start site region 158618
Tssr158619 19 23136547 to 23136592 45 - TSS region transcription start site region 158619
Tssr155575 19 23136727 to 23136735 8 + TSS region transcription start site region 155575
Tssr155576 19 23136737 to 23136744 7 + TSS region transcription start site region 155576
Tssr158620 19 23136781 to 23136785 4 - TSS region transcription start site region 158620
Tssr155577 19 23136865 to 23136877 12 + TSS region transcription start site region 155577
Tssr155578 19 23140107 to 23140111 4 + TSS region transcription start site region 155578
Tssr158621 19 23140637 to 23140653 16 - TSS region transcription start site region 158621
Cpgi10683 19 23140654 to 23142639 1985 CpG island CpG island 10683
Tssr155579 19 23140822 to 23140841 19 + TSS region transcription start site region 155579
Tssr155580 19 23140940 to 23140951 11 + TSS region transcription start site region 155580
Tssr155581 19 23140956 to 23140967 11 + TSS region transcription start site region 155581
Tssr158622 19 23140967 to 23140973 6 - TSS region transcription start site region 158622
Tssr155582 19 23140979 to 23141004 25 + TSS region transcription start site region 155582
Tssr155583 19 23141019 to 23141033 14 + TSS region transcription start site region 155583
Tssr155584 19 23141064 to 23141077 13 + TSS region transcription start site region 155584
Tssr155585 19 23141126 to 23141137 11 + TSS region transcription start site region 155585
Tssr155586 19 23141183 to 23141263 80 + TSS region transcription start site region 155586
Klf9 19 23141226 to 23166911 25685 + protein coding gene Kruppel-like factor 9
Tssr155587 19 23141642 to 23141667 25 + TSS region transcription start site region 155587
Tssr155588 19 23141676 to 23141701 25 + TSS region transcription start site region 155588
Tssr158623 19 23142056 to 23142076 20 - TSS region transcription start site region 158623
Tssr158624 19 23142370 to 23142420 50 - TSS region transcription start site region 158624
Mir1192 19 23149431 to 23149551 120 + miRNA gene microRNA 1192
Tssr155589 19 23165227 to 23165240 13 + TSS region transcription start site region 155589
D19Ertd79e 19 23176118 to 23176367 249 DNA segment DNA segment, Chr 19, ERATO Doi 79, expressed
Smc5 19 23206451 to 23273897 67446 - protein coding gene structural maintenance of chromosomes 5
Tssr158625 19 23207526 to 23207550 24 - TSS region transcription start site region 158625
D19Ertd756e 19 23216829 to 23217058 229 DNA segment DNA segment, Chr 19, ERATO Doi 756, expressed
Tssr158626 19 23246640 to 23246655 15 - TSS region transcription start site region 158626
Cpgi10684 19 23273224 to 23274310 1086 CpG island CpG island 10684
Tssr158627 19 23273789 to 23273796 7 - TSS region transcription start site region 158627
Tssr158628 19 23273815 to 23273861 46 - TSS region transcription start site region 158628
Tssr158629 19 23273864 to 23273884 20 - TSS region transcription start site region 158629
Tssr158630 19 23273893 to 23273918 25 - TSS region transcription start site region 158630
Gm33950 19 23273925 to 23274359 434 + lncRNA gene predicted gene, 33950
Gm24263 19 23296329 to 23296435 106 + snRNA gene predicted gene, 24263
Gm41821 19 23299930 to 23309919 9989 + lncRNA gene predicted gene, 41821
Mamdc2 19 23302609 to 23448322 145713 - protein coding gene MAM domain containing 2
D19Mit80 19 23313374 to 23313498 124 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 80
Tssr158631 19 23357562 to 23357588 26 - TSS region transcription start site region 158631
Cpgi10685 19 23448035 to 23448360 325 CpG island CpG island 10685
Tssr158632 19 23448190 to 23448201 11 - TSS region transcription start site region 158632
Tssr158633 19 23448249 to 23448279 30 - TSS region transcription start site region 158633
Tssr158634 19 23448289 to 23448300 11 - TSS region transcription start site region 158634
Tssr158635 19 23448332 to 23448350 18 - TSS region transcription start site region 158635
Tssr158636 19 23448356 to 23448378 22 - TSS region transcription start site region 158636
Tssr158637 19 23448393 to 23448406 13 - TSS region transcription start site region 158637
Tssr158638 19 23448411 to 23448425 14 - TSS region transcription start site region 158638
Gm34012 19 23496764 to 23523052 26288 + lncRNA gene predicted gene, 34012
1700028P14Rik 19 23558760 to 23652812 94052 - protein coding gene RIKEN cDNA 1700028P14 gene
Tssr155590 19 23605837 to 23605843 6 + TSS region transcription start site region 155590
Tssr155591 19 23619325 to 23619327 2 + TSS region transcription start site region 155591
Gm9493 19 23619742 to 23620320 578 + protein coding gene predicted gene 9493
Gm22144 19 23643409 to 23643510 101 + snoRNA gene predicted gene, 22144
Tssr158639 19 23652780 to 23652820 40 - TSS region transcription start site region 158639
Gm21542 19 23666591 to 23667583 992 + pseudogene predicted gene, 21542
Tssr155592 19 23675839 to 23675863 24 + TSS region transcription start site region 155592
Gm6563 19 23675844 to 23676712 868 + pseudogene predicted pseudogene 6563
Cpgi10686 19 23687063 to 23688026 963 CpG island CpG island 10686
Tssr155593 19 23687173 to 23687212 39 + TSS region transcription start site region 155593
Tssr155594 19 23687385 to 23687408 23 + TSS region transcription start site region 155594
Ptar1 19 23687400 to 23721129 33729 + protein coding gene protein prenyltransferase alpha subunit repeat containing 1
Tssr155595 19 23687416 to 23687463 47 + TSS region transcription start site region 155595
Tssr155596 19 23687663 to 23687675 12 + TSS region transcription start site region 155596
Tssr155597 19 23687707 to 23687724 17 + TSS region transcription start site region 155597
Gm9938 19 23723279 to 23725034 1755 + protein coding gene predicted gene 9938
2810455D13Rik 19 23728706 to 23731663 2957 unclassified gene RIKEN cDNA 2810455D13 gene
Tssr155598 19 23730204 to 23730208 4 + TSS region transcription start site region 155598
Cpgi10687 19 23758077 to 23759769 1692 CpG island CpG island 10687
Tssr155599 19 23758792 to 23758807 15 + TSS region transcription start site region 155599
Tssr155600 19 23758819 to 23758907 88 + TSS region transcription start site region 155600
Apba1 19 23758876 to 23949597 190721 + protein coding gene amyloid beta (A4) precursor protein binding, family A, member 1
Tssr155601 19 23758984 to 23758998 14 + TSS region transcription start site region 155601
Tssr155602 19 23759012 to 23759025 13 + TSS region transcription start site region 155602
Tssr155603 19 23845606 to 23845609 3 + TSS region transcription start site region 155603
Tssr155604 19 23857185 to 23857190 5 + TSS region transcription start site region 155604
B230104F01Rik 19 23870739 to 23871825 1086 unclassified gene RIKEN cDNA B230104F01 gene
Cpgi10688 19 23892646 to 23894100 1454 CpG island CpG island 10688
Tssr155605 19 23893485 to 23893502 17 + TSS region transcription start site region 155605
Tssr155606 19 23893506 to 23893536 30 + TSS region transcription start site region 155606
Tssr155607 19 23893541 to 23893553 12 + TSS region transcription start site region 155607
Tssr155608 19 23893589 to 23893609 20 + TSS region transcription start site region 155608
Tssr155609 19 23904577 to 23904583 6 + TSS region transcription start site region 155609
Tssr155610 19 23904589 to 23904632 43 + TSS region transcription start site region 155610
Gm34076 19 23905122 to 23917546 12424 - lncRNA gene predicted gene, 34076
D19Dcr22 19 23934240 to 23934335 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 22
D19Dcr23 19 23956384 to 23956479 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 23
Fam189a2 19 23972751 to 24031019 58268 - protein coding gene family with sequence similarity 189, member A2
Cpgi10689 19 24004652 to 24004808 156 CpG island CpG island 10689
Tssr158640 19 24007334 to 24007354 20 - TSS region transcription start site region 158640
D19Mit73 19 24019333 to 24019482 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 73
Cpgi10690 19 24030271 to 24031550 1279 CpG island CpG island 10690
Tssr155611 19 24030818 to 24030822 4 + TSS region transcription start site region 155611
Tssr158641 19 24030917 to 24030995 78 - TSS region transcription start site region 158641
Tssr158642 19 24031006 to 24031028 22 - TSS region transcription start site region 158642
Tssr158643 19 24031238 to 24031251 13 - TSS region transcription start site region 158643
Tssr158644 19 24042547 to 24042567 20 - TSS region transcription start site region 158644
Gm41823 19 24044383 to 24047157 2774 - lncRNA gene predicted gene, 41823
D19Dcr24 19 24053133 to 24053238 105 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 24
1700021P04Rik 19 24064793 to 24066452 1659 + lincRNA gene RIKEN cDNA 1700021P04 gene
Gm41824 19 24080931 to 24090765 9834 + lncRNA gene predicted gene, 41824
Tjp2 19 24094505 to 24225030 130525 - protein coding gene tight junction protein 2
Tssr158645 19 24125809 to 24125846 37 - TSS region transcription start site region 158645
Cpgi10691 19 24130976 to 24131285 309 CpG island CpG island 10691
Tssr158646 19 24142875 to 24142886 11 - TSS region transcription start site region 158646
Tssr158647 19 24142907 to 24142914 7 - TSS region transcription start site region 158647
Tssr158648 19 24147035 to 24147076 41 - TSS region transcription start site region 158648
Cpgi10692 19 24173625 to 24174820 1195 CpG island CpG island 10692
Tssr158649 19 24174052 to 24174099 47 - TSS region transcription start site region 158649
Tssr158650 19 24174142 to 24174159 17 - TSS region transcription start site region 158650
Tssr158651 19 24175337 to 24175363 26 - TSS region transcription start site region 158651
Tssr158652 19 24191477 to 24191481 4 - TSS region transcription start site region 158652
Tssr155612 19 24197553 to 24197560 7 + TSS region transcription start site region 155612
Tssr155613 19 24197562 to 24197569 7 + TSS region transcription start site region 155613
Tssr5464 19 24200480 to 24200487 7 - TSS region transcription start site region 5464
Tssr158653 19 24200641 to 24200652 11 - TSS region transcription start site region 158653
Tssr158654 19 24200656 to 24200668 12 - TSS region transcription start site region 158654
Tssr158655 19 24201974 to 24201975 1 - TSS region transcription start site region 158655
Tssr155614 19 24224037 to 24224052 15 + TSS region transcription start site region 155614
Cpgi10693 19 24224373 to 24225356 983 CpG island CpG island 10693
Tssr158656 19 24224892 to 24224909 17 - TSS region transcription start site region 158656
Tssr158657 19 24224924 to 24224946 22 - TSS region transcription start site region 158657
Tssr158658 19 24224948 to 24224966 18 - TSS region transcription start site region 158658
Tssr158659 19 24224980 to 24224994 14 - TSS region transcription start site region 158659
Tssr158660 19 24225015 to 24225033 18 - TSS region transcription start site region 158660
Tssr158661 19 24225043 to 24225051 8 - TSS region transcription start site region 158661
Tssr158662 19 24225063 to 24225074 11 - TSS region transcription start site region 158662
Tssr158663 19 24225080 to 24225116 36 - TSS region transcription start site region 158663
D19Mit107 19 24226326 to 24226443 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 107
Fxn 19 24261453 to 24280586 19133 - protein coding gene frataxin
Cpgi10694 19 24279854 to 24280810 956 CpG island CpG island 10694
Tssr158664 19 24280551 to 24280615 64 - TSS region transcription start site region 158664
Gm8789 19 24289000 to 24290908 1908 - pseudogene predicted gene 8789
Gm16216 19 24289716 to 24290826 1110 + pseudogene predicted gene 16216
Pip5k1b 19 24294794 to 24555827 261033 - protein coding gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
Gm3853 19 24298837 to 24300937 2100 unclassified gene predicted gene 3853
Tssr155615 19 24300663 to 24300673 10 + TSS region transcription start site region 155615
Tssr158665 19 24350756 to 24350758 2 - TSS region transcription start site region 158665
D19Mit117 19 24375777 to 24375885 108 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 117
Tssr155616 19 24416003 to 24416013 10 + TSS region transcription start site region 155616
Pip5k1bos 19 24416009 to 24430329 14320 + antisense lncRNA gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, opposite strand
Tssr155617 19 24416022 to 24416031 9 + TSS region transcription start site region 155617
Tssr5465 19 24416035 to 24416042 7 + TSS region transcription start site region 5465