Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:32060459-32750467

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9796 18 32067522 to 32068316 794 CpG island CpG island 9796
Tssr150382 18 32067729 to 32067811 82 + TSS region transcription start site region 150382
Iws1 18 32067741 to 32104328 36587 + protein coding gene IWS1, SUPT6 interacting protein
Tssr150383 18 32067973 to 32068013 40 + TSS region transcription start site region 150383
Tssr152727 18 32068158 to 32068195 37 - TSS region transcription start site region 152727
Tssr150384 18 32068883 to 32068887 4 + TSS region transcription start site region 150384
Gm49966 18 32112041 to 32112307 266 - pseudogene predicted gene, 49966
4933435E02Rik 18 32112459 to 32120412 7953 unclassified gene RIKEN cDNA 4933435E02 gene
Proc 18 32123126 to 32139570 16444 - protein coding gene protein C
Cpgi9797 18 32133084 to 32133510 426 CpG island CpG island 9797
Tssr152728 18 32134659 to 32134690 31 - TSS region transcription start site region 152728
Tssr152729 18 32135952 to 32135954 2 - TSS region transcription start site region 152729
Tssr152730 18 32136511 to 32136514 3 - TSS region transcription start site region 152730
Tssr152731 18 32138020 to 32138027 7 - TSS region transcription start site region 152731
Tssr152732 18 32138162 to 32138169 7 - TSS region transcription start site region 152732
Tssr152733 18 32138175 to 32138199 24 - TSS region transcription start site region 152733
Cpgi9798 18 32139500 to 32139888 388 CpG island CpG island 9798
Gm5969 18 32140729 to 32141830 1101 + pseudogene predicted gene 5969
Cpgi9799 18 32147545 to 32147785 240 CpG island CpG island 9799
Tssr5268 18 32147743 to 32147756 13 + TSS region transcription start site region 5268
Gm26717 18 32152427 to 32158291 5864 + lincRNA gene predicted gene, 26717
Gm34806 18 32154406 to 32162759 8353 - lncRNA gene predicted gene, 34806
Cpgi9800 18 32162560 to 32163859 1299 CpG island CpG island 9800
Tssr150385 18 32162972 to 32162982 10 + TSS region transcription start site region 150385
Tssr5269 18 32162991 to 32162992 1 + TSS region transcription start site region 5269
Tssr150386 18 32163015 to 32163020 5 + TSS region transcription start site region 150386
Tssr150387 18 32163042 to 32163053 11 + TSS region transcription start site region 150387
Tssr150388 18 32163062 to 32163069 7 + TSS region transcription start site region 150388
Tssr150389 18 32163073 to 32163115 42 + TSS region transcription start site region 150389
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2
Cpgi9801 18 32239991 to 32240746 755 CpG island CpG island 9801
Tssr152734 18 32240227 to 32240274 47 - TSS region transcription start site region 152734
Ercc3 18 32240304 to 32270151 29847 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 3
Tssr150390 18 32240309 to 32240342 33 + TSS region transcription start site region 150390
Gm22325 18 32293350 to 32293657 307 + unclassified non-coding RNA gene predicted gene, 22325
D18Mit88 18 32312317 to 32312456 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 88
D18Mit200 18 32322947 to 32323067 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 200
A830052D11Rik 18 32359053 to 32378278 19225 - lincRNA gene RIKEN cDNA A830052D11 gene
Cpgi9802 18 32376748 to 32378184 1436 CpG island CpG island 9802
Tssr150391 18 32377135 to 32377139 4 + TSS region transcription start site region 150391
Tssr150392 18 32377176 to 32377289 113 + TSS region transcription start site region 150392
Bin1 18 32377230 to 32435737 58507 + protein coding gene bridging integrator 1
Tssr150393 18 32377294 to 32377317 23 + TSS region transcription start site region 150393
Tssr150394 18 32377365 to 32377368 3 + TSS region transcription start site region 150394
Tssr150395 18 32385559 to 32385572 13 + TSS region transcription start site region 150395
Tssr150396 18 32395911 to 32395951 40 + TSS region transcription start site region 150396
Tssr150397 18 32397554 to 32397561 7 + TSS region transcription start site region 150397
Tssr150398 18 32397580 to 32397595 15 + TSS region transcription start site region 150398
Tssr150399 18 32397617 to 32397678 61 + TSS region transcription start site region 150399
Tssr152735 18 32399983 to 32399989 6 - TSS region transcription start site region 152735
Tssr150400 18 32400252 to 32400281 29 + TSS region transcription start site region 150400
Tssr152736 18 32405459 to 32405467 8 - TSS region transcription start site region 152736
Tssr150401 18 32407593 to 32407630 37 + TSS region transcription start site region 150401
Tssr150402 18 32430904 to 32430928 24 + TSS region transcription start site region 150402
Tssr150403 18 32431969 to 32432017 48 + TSS region transcription start site region 150403
Tssr150404 18 32435256 to 32435281 25 + TSS region transcription start site region 150404
Tssr152737 18 32448409 to 32448422 13 - TSS region transcription start site region 152737
Tssr152738 18 32448432 to 32448446 14 - TSS region transcription start site region 152738
Gm35060 18 32458085 to 32462910 4825 - protein coding gene predicted gene, 35060
Tssr152739 18 32462462 to 32462468 6 - TSS region transcription start site region 152739
Tssr152740 18 32462490 to 32462504 14 - TSS region transcription start site region 152740
Tssr152741 18 32462505 to 32462512 7 - TSS region transcription start site region 152741
D18Mit60 18 32489109 to 32489313 204 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 60
Gm20136 18 32499500 to 32500432 932 - pseudogene predicted gene, 20136
Gm44577 18 32508209 to 32518537 10328 + bidirectional promoter lncRNA gene predicted gene 44577
Gypc 18 32528322 to 32560034 31712 - protein coding gene glycophorin C
Tssr152742 18 32553657 to 32553673 16 - TSS region transcription start site region 152742
Tssr152743 18 32555425 to 32555430 5 - TSS region transcription start site region 152743
Tssr150405 18 32558470 to 32558476 6 + TSS region transcription start site region 150405
Cpgi9803 18 32559477 to 32560078 601 CpG island CpG island 9803
Tssr152744 18 32559823 to 32559836 13 - TSS region transcription start site region 152744
Tssr152745 18 32559839 to 32559855 16 - TSS region transcription start site region 152745
Tssr152746 18 32559857 to 32559887 30 - TSS region transcription start site region 152746
Tssr152747 18 32559914 to 32560018 104 - TSS region transcription start site region 152747
Tssr152748 18 32560125 to 32560145 20 - TSS region transcription start site region 152748
Gm35480 18 32585357 to 32591702 6345 + lncRNA gene predicted gene, 35480
Gm25826 18 32621920 to 32622056 136 - snoRNA gene predicted gene, 25826
4930455D15Rik 18 32663642 to 32837287 173645 - lincRNA gene RIKEN cDNA 4930455D15 gene
D18Mit59 18 32748623 to 32748796 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 59