Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47158658-47579364

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trerf1 17 47140942 to 47359458 218516 + protein coding gene transcriptional regulating factor 1
Tssr144898 17 47207101 to 47207124 23 + TSS region transcription start site region 144898
Tssr144899 17 47267368 to 47267377 9 + TSS region transcription start site region 144899
Gm26216 17 47290956 to 47291028 72 + rRNA gene predicted gene, 26216
Tssr144900 17 47313940 to 47313957 17 + TSS region transcription start site region 144900
Tssr144901 17 47314010 to 47314037 27 + TSS region transcription start site region 144901
Cpgi9253 17 47323379 to 47323661 282 CpG island CpG island 9253
Tssr144902 17 47325613 to 47325617 4 + TSS region transcription start site region 144902
9530075M24Rik 17 47327114 to 47327618 504 unclassified gene RIKEN cDNA 9530075M24 gene
Cpgi9254 17 47368658 to 47369364 706 CpG island CpG island 9254
Tssr144903 17 47368882 to 47368910 28 + TSS region transcription start site region 144903
Mrps10 17 47368887 to 47381417 12530 + protein coding gene mitochondrial ribosomal protein S10
Tssr144904 17 47369172 to 47369212 40 + TSS region transcription start site region 144904
Tssr144905 17 47385375 to 47385380 5 + TSS region transcription start site region 144905
Tssr144906 17 47385386 to 47385395 9 + TSS region transcription start site region 144906
Guca1b 17 47385393 to 47392967 7574 + protein coding gene guanylate cyclase activator 1B
Tssr144907 17 47385413 to 47385439 26 + TSS region transcription start site region 144907
Cpgi9255 17 47385446 to 47385733 287 CpG island CpG island 9255
A930003K04Rik 17 47388269 to 47388873 604 unclassified gene RIKEN cDNA A930003K04 gene
Cpgi9256 17 47394545 to 47395169 624 CpG island CpG island 9256
Guca1a 17 47394558 to 47400584 6026 - protein coding gene guanylate cyclase activator 1a (retina)
Tssr148418 17 47395365 to 47395378 13 - TSS region transcription start site region 148418
Tssr148419 17 47395380 to 47395391 11 - TSS region transcription start site region 148419
Tssr148420 17 47395398 to 47395416 18 - TSS region transcription start site region 148420
Cpgi9257 17 47395443 to 47395766 323 CpG island CpG island 9257
Tssr148421 17 47395684 to 47395725 41 - TSS region transcription start site region 148421
Tssr148422 17 47395742 to 47395775 33 - TSS region transcription start site region 148422
Tssr148423 17 47400549 to 47400571 22 - TSS region transcription start site region 148423
Tssr148424 17 47400585 to 47400599 14 - TSS region transcription start site region 148424
Tssr148425 17 47400616 to 47400619 3 - TSS region transcription start site region 148425
Cpgi9258 17 47409842 to 47410802 960 CpG island CpG island 9258
Tssr144908 17 47410247 to 47410253 6 + TSS region transcription start site region 144908
Gm5814 17 47410363 to 47410737 374 + pseudogene predicted pseudogene 5814
Tssr144909 17 47410507 to 47410549 42 + TSS region transcription start site region 144909
Tssr144910 17 47410852 to 47410884 32 + TSS region transcription start site region 144910
1700001C19Rik 17 47412734 to 47437376 24642 - protein coding gene RIKEN cDNA 1700001C19 gene
Tssr148426 17 47414667 to 47414670 3 - TSS region transcription start site region 148426
Tssr148427 17 47414685 to 47414691 6 - TSS region transcription start site region 148427
Tssr148428 17 47414705 to 47414725 20 - TSS region transcription start site region 148428
Tssr148429 17 47414729 to 47414736 7 - TSS region transcription start site region 148429
Tssr148430 17 47421852 to 47421864 12 - TSS region transcription start site region 148430
Tssr148431 17 47421873 to 47421885 12 - TSS region transcription start site region 148431
Tssr148432 17 47422539 to 47422554 15 - TSS region transcription start site region 148432
Tssr148433 17 47422579 to 47422588 9 - TSS region transcription start site region 148433
Tssr148434 17 47433264 to 47433267 3 - TSS region transcription start site region 148434
Tssr148435 17 47433408 to 47433430 22 - TSS region transcription start site region 148435
Tssr148436 17 47433432 to 47433456 24 - TSS region transcription start site region 148436
Cpgi9259 17 47436194 to 47437392 1198 CpG island CpG island 9259
Tssr144911 17 47436585 to 47436595 10 + TSS region transcription start site region 144911
Tssr144912 17 47436601 to 47436608 7 + TSS region transcription start site region 144912
Tssr144913 17 47436616 to 47436639 23 + TSS region transcription start site region 144913
AI661453 17 47436639 to 47470638 33999 + protein coding gene expressed sequence AI661453
Tssr144914 17 47436647 to 47436658 11 + TSS region transcription start site region 144914
Tssr144915 17 47436731 to 47436743 12 + TSS region transcription start site region 144915
Tssr148437 17 47437220 to 47437247 27 - TSS region transcription start site region 148437
Tssr148438 17 47437365 to 47437391 26 - TSS region transcription start site region 148438
D17Mit250 17 47459685 to 47459809 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 250
D17Dcr10 17 47459694 to 47459817 123 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 10
Tssr148439 17 47465829 to 47465841 12 - TSS region transcription start site region 148439
Tssr144916 17 47468337 to 47468378 41 + TSS region transcription start site region 144916
Cpgi9260 17 47468370 to 47468997 627 CpG island CpG island 9260
Taf8 17 47483414 to 47502321 18907 - protein coding gene TATA-box binding protein associated factor 8
Tssr148440 17 47501899 to 47501946 47 - TSS region transcription start site region 148440
Cpgi9261 17 47501996 to 47502390 394 CpG island CpG island 9261
Tssr148441 17 47502276 to 47502296 20 - TSS region transcription start site region 148441
Tssr144917 17 47504841 to 47504844 3 + TSS region transcription start site region 144917
Cpgi9262 17 47504876 to 47505345 469 CpG island CpG island 9262
Tssr144918 17 47504949 to 47504960 11 + TSS region transcription start site region 144918
Tssr144919 17 47505043 to 47505066 23 + TSS region transcription start site region 144919
Ccnd3 17 47505051 to 47599689 94638 + protein coding gene cyclin D3
Tssr144920 17 47505073 to 47505084 11 + TSS region transcription start site region 144920
Tssr144921 17 47505085 to 47505105 20 + TSS region transcription start site region 144921
Tssr144922 17 47505117 to 47505132 15 + TSS region transcription start site region 144922
Tssr144923 17 47505158 to 47505164 6 + TSS region transcription start site region 144923
Tssr144924 17 47505174 to 47505182 8 + TSS region transcription start site region 144924
Tssr144925 17 47505191 to 47505205 14 + TSS region transcription start site region 144925
Tssr144926 17 47505211 to 47505228 17 + TSS region transcription start site region 144926
Tssr148442 17 47507986 to 47508006 20 - TSS region transcription start site region 148442
Tssr144927 17 47508287 to 47508306 19 + TSS region transcription start site region 144927
Tssr144928 17 47509193 to 47509205 12 + TSS region transcription start site region 144928
Tssr144929 17 47509342 to 47509364 22 + TSS region transcription start site region 144929
Tssr144930 17 47509420 to 47509440 20 + TSS region transcription start site region 144930
Tssr144931 17 47509448 to 47509457 9 + TSS region transcription start site region 144931
Tssr5140 17 47509476 to 47509491 15 + TSS region transcription start site region 5140
Tssr148443 17 47509500 to 47509511 11 - TSS region transcription start site region 148443
Tssr144932 17 47509517 to 47509534 17 + TSS region transcription start site region 144932
Tssr144933 17 47509563 to 47509583 20 + TSS region transcription start site region 144933
Tssr144934 17 47509629 to 47509650 21 + TSS region transcription start site region 144934
Tssr144935 17 47510629 to 47510638 9 + TSS region transcription start site region 144935
Tssr144936 17 47511879 to 47511890 11 + TSS region transcription start site region 144936
Tssr144937 17 47511893 to 47511906 13 + TSS region transcription start site region 144937
Tssr144938 17 47512897 to 47512910 13 + TSS region transcription start site region 144938
Tssr5141 17 47518882 to 47518922 40 + TSS region transcription start site region 5141
Tssr5142 17 47521822 to 47521829 7 + TSS region transcription start site region 5142
Tssr144939 17 47521926 to 47521936 10 + TSS region transcription start site region 144939
Cpgi9263 17 47523280 to 47523474 194 CpG island CpG island 9263
Tssr144940 17 47527789 to 47527806 17 + TSS region transcription start site region 144940
5830436I19Rik 17 47527960 to 47532815 4855 unclassified non-coding RNA gene RIKEN cDNA 5830436I19 gene
Tssr144941 17 47527977 to 47527992 15 + TSS region transcription start site region 144941
Tssr144942 17 47529313 to 47529324 11 + TSS region transcription start site region 144942
Tssr148444 17 47535830 to 47535846 16 - TSS region transcription start site region 148444
Tssr144943 17 47538436 to 47538448 12 + TSS region transcription start site region 144943
Tssr144944 17 47538639 to 47538653 14 + TSS region transcription start site region 144944
Tssr144945 17 47538689 to 47538695 6 + TSS region transcription start site region 144945
Tssr144946 17 47540277 to 47540288 11 + TSS region transcription start site region 144946
Tssr144947 17 47540416 to 47540424 8 + TSS region transcription start site region 144947
Tssr144948 17 47540443 to 47540459 16 + TSS region transcription start site region 144948
Tssr144949 17 47540487 to 47540501 14 + TSS region transcription start site region 144949
Tssr144950 17 47540725 to 47540737 12 + TSS region transcription start site region 144950
Tssr144951 17 47540742 to 47540755 13 + TSS region transcription start site region 144951
Tssr144952 17 47540758 to 47540772 14 + TSS region transcription start site region 144952
Gm41590 17 47540824 to 47546964 6140 - lncRNA gene predicted gene, 41590
Tssr144953 17 47542530 to 47542534 4 + TSS region transcription start site region 144953
Tssr144954 17 47546396 to 47546408 12 + TSS region transcription start site region 144954
Tssr144955 17 47551160 to 47551164 4 + TSS region transcription start site region 144955
D17Mit65 17 47553192 to 47553322 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 65
Tssr144956 17 47557519 to 47557525 6 + TSS region transcription start site region 144956
Tssr144957 17 47557604 to 47557620 16 + TSS region transcription start site region 144957
Tssr144958 17 47557700 to 47557709 9 + TSS region transcription start site region 144958
Tssr144959 17 47557717 to 47557726 9 + TSS region transcription start site region 144959
Tssr144960 17 47557787 to 47557826 39 + TSS region transcription start site region 144960
Tssr144961 17 47557828 to 47557839 11 + TSS region transcription start site region 144961
Tssr144962 17 47557846 to 47557865 19 + TSS region transcription start site region 144962
Tssr144963 17 47557907 to 47557926 19 + TSS region transcription start site region 144963
Tssr144964 17 47558405 to 47558432 27 + TSS region transcription start site region 144964
D17Mit68 17 47570156 to 47570285 129 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 68
D17Dcr11 17 47570190 to 47570290 100 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 11
D17Mit115 17 47574619 to 47574740 121 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 115
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3