Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:30957698-31737199

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hst6 17 29491045 to 31681724 2190679 heritable phenotypic marker hybrid sterility 6
Umodl1 17 30954679 to 31010708 56029 + protein coding gene uromodulin-like 1
Gm24026 17 30967197 to 30967294 97 + miRNA gene predicted gene, 24026
Tssr143633 17 30984078 to 30984089 11 + TSS region transcription start site region 143633
Tssr143634 17 30984090 to 30984100 10 + TSS region transcription start site region 143634
Tssr143635 17 31001936 to 31001942 6 + TSS region transcription start site region 143635
Tssr147268 17 31039700 to 31039746 46 - TSS region transcription start site region 147268
Tssr143636 17 31039860 to 31039865 5 + TSS region transcription start site region 143636
Cpgi8940 17 31057265 to 31058361 1096 CpG island CpG island 8940
Tssr143637 17 31057686 to 31057699 13 + TSS region transcription start site region 143637
Del(17Abcg1-Rrp1b)5Yey 17 31057698 to 32062865 1005167 chromosomal deletion deletion, Chr 17, Y Eugene Yu 5
Del(17Abcg1-Cbs)2Yah 17 31057698 to 31637199 579501 chromosomal deletion deletion, Chr 17, Yann Herault 2
Dp(17Abcg1-Rrp1b)3Yey 17 31057698 to 32062865 1005167 chromosomal duplication duplication, Chr 17, Y Eugene Yu 3
Dp(17Abcg1-Cbs)1Yah 17 31057698 to 31637199 579501 chromosomal duplication duplication, Chr 17, Yann Herault 1
Abcg1 17 31057698 to 31115777 58079 + protein coding gene ATP binding cassette subfamily G member 1
Tssr143638 17 31057704 to 31057713 9 + TSS region transcription start site region 143638
Tssr143639 17 31057719 to 31057734 15 + TSS region transcription start site region 143639
Tssr143640 17 31057740 to 31057749 9 + TSS region transcription start site region 143640
Tssr143641 17 31057768 to 31057778 10 + TSS region transcription start site region 143641
Gm25447 17 31059604 to 31059731 127 + rRNA gene predicted gene, 25447
Tssr143642 17 31067273 to 31067291 18 + TSS region transcription start site region 143642
Tssr143643 17 31067293 to 31067299 6 + TSS region transcription start site region 143643
Tssr143644 17 31067349 to 31067358 9 + TSS region transcription start site region 143644
Tssr143645 17 31069890 to 31069908 18 + TSS region transcription start site region 143645
Cpgi8941 17 31073306 to 31073683 377 CpG island CpG island 8941
Tssr147269 17 31074690 to 31074711 21 - TSS region transcription start site region 147269
Tssr143646 17 31098017 to 31098020 3 + TSS region transcription start site region 143646
Tssr143647 17 31104107 to 31104116 9 + TSS region transcription start site region 143647
Tssr143648 17 31106091 to 31106105 14 + TSS region transcription start site region 143648
Tssr143649 17 31108403 to 31108414 11 + TSS region transcription start site region 143649
Tssr143650 17 31111006 to 31111025 19 + TSS region transcription start site region 143650
Tssr143651 17 31114529 to 31114533 4 + TSS region transcription start site region 143651
Tssr143652 17 31115025 to 31115057 32 + TSS region transcription start site region 143652
Tssr143653 17 31115531 to 31115543 12 + TSS region transcription start site region 143653
Tff3 17 31125306 to 31129611 4305 - protein coding gene trefoil factor 3, intestinal
Tssr147270 17 31129602 to 31129619 17 - TSS region transcription start site region 147270
Tff2 17 31141062 to 31144282 3220 - protein coding gene trefoil factor 2 (spasmolytic protein 1)
Tssr5067 17 31143254 to 31143271 17 - TSS region transcription start site region 5067
Tssr147271 17 31144251 to 31144265 14 - TSS region transcription start site region 147271
Tssr147272 17 31144271 to 31144288 17 - TSS region transcription start site region 147272
Gm15318 17 31152752 to 31163052 10300 + antisense lncRNA gene predicted gene 15318
Tssr5068 17 31152792 to 31152829 37 + TSS region transcription start site region 5068
Tssr5069 17 31152864 to 31152875 11 + TSS region transcription start site region 5069
Tssr5070 17 31161394 to 31161398 4 + TSS region transcription start site region 5070
Tff1 17 31161396 to 31165053 3657 - protein coding gene trefoil factor 1
Tssr5071 17 31161431 to 31161436 5 - TSS region transcription start site region 5071
Tssr5072 17 31161478 to 31161484 6 - TSS region transcription start site region 5072
Tssr5073 17 31161513 to 31161525 12 - TSS region transcription start site region 5073
Tssr5075 17 31161536 to 31161567 31 + TSS region transcription start site region 5075
Tssr5074 17 31161536 to 31161543 7 - TSS region transcription start site region 5074
Tssr5076 17 31162684 to 31162693 9 - TSS region transcription start site region 5076
Tssr5077 17 31162759 to 31162782 23 - TSS region transcription start site region 5077
Tssr5078 17 31162795 to 31162811 16 - TSS region transcription start site region 5078
Tssr147273 17 31165045 to 31165053 8 - TSS region transcription start site region 147273
Tmprss3 17 31179272 to 31198975 19703 - protein coding gene transmembrane protease, serine 3
Tssr5079 17 31186221 to 31186258 37 - TSS region transcription start site region 5079
Tssr5080 17 31186620 to 31186656 36 - TSS region transcription start site region 5080
Tssr5081 17 31198906 to 31198912 6 - TSS region transcription start site region 5081
Tssr147274 17 31198924 to 31198954 30 - TSS region transcription start site region 147274
Tssr147275 17 31198958 to 31198976 18 - TSS region transcription start site region 147275
Tssr147276 17 31199008 to 31199012 4 - TSS region transcription start site region 147276
Ubash3a 17 31207873 to 31242202 34329 + protein coding gene ubiquitin associated and SH3 domain containing, A
Tssr143654 17 31208049 to 31208112 63 + TSS region transcription start site region 143654
Tssr147277 17 31208797 to 31208805 8 - TSS region transcription start site region 147277
Tssr147278 17 31208813 to 31208835 22 - TSS region transcription start site region 147278
Tssr143655 17 31212106 to 31212121 15 + TSS region transcription start site region 143655
Tssr143656 17 31247323 to 31247334 11 + TSS region transcription start site region 143656
Rsph1 17 31255019 to 31277356 22337 - protein coding gene radial spoke head 1 homolog (Chlamydomonas)
Gm30090 17 31258196 to 31259681 1485 + lncRNA gene predicted gene, 30090
Tssr147279 17 31260508 to 31260512 4 - TSS region transcription start site region 147279
Tssr147280 17 31265868 to 31265878 10 - TSS region transcription start site region 147280
Tssr147281 17 31268354 to 31268358 4 - TSS region transcription start site region 147281
Cpgi8942 17 31276927 to 31277545 618 CpG island CpG island 8942
Tssr147282 17 31277257 to 31277325 68 - TSS region transcription start site region 147282
Tssr147283 17 31277327 to 31277352 25 - TSS region transcription start site region 147283
Tssr5082 17 31277378 to 31277382 4 - TSS region transcription start site region 5082
Tssr147284 17 31277389 to 31277404 15 - TSS region transcription start site region 147284
Gm8437 17 31278503 to 31299821 21318 unclassified gene predicted gene 8437
Gm30139 17 31285484 to 31292441 6957 - lncRNA gene predicted gene, 30139
Slc37a1 17 31295483 to 31350696 55213 + protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 1
Cpgi8943 17 31295770 to 31296893 1123 CpG island CpG island 8943
Tssr5083 17 31295806 to 31295819 13 + TSS region transcription start site region 5083
Tssr143657 17 31296191 to 31296253 62 + TSS region transcription start site region 143657
Tssr147285 17 31296623 to 31296646 23 - TSS region transcription start site region 147285
Tssr147286 17 31296650 to 31296666 16 - TSS region transcription start site region 147286
Tssr143658 17 31296722 to 31296794 72 + TSS region transcription start site region 143658
Tssr143659 17 31296796 to 31296816 20 + TSS region transcription start site region 143659
Tssr143660 17 31296986 to 31296999 13 + TSS region transcription start site region 143660
Tssr143661 17 31319857 to 31319882 25 + TSS region transcription start site region 143661
D17Mit146.1 17 31320504 to 31320668 164 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146.1
D17Mit146 17 31320646 to 31320751 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146
Tssr143662 17 31322140 to 31322153 13 + TSS region transcription start site region 143662
Cpgi8944 17 31385959 to 31386777 818 CpG island CpG island 8944
Tssr143663 17 31386218 to 31386238 20 + TSS region transcription start site region 143663
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143664 17 31386244 to 31386280 36 + TSS region transcription start site region 143664
Gm9902 17 31432999 to 31434831 1832 unclassified gene predicted gene 9902
Tssr143665 17 31433054 to 31433063 9 + TSS region transcription start site region 143665
Tssr143666 17 31433099 to 31433156 57 + TSS region transcription start site region 143666
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668
Tssr143669 17 31471042 to 31471047 5 + TSS region transcription start site region 143669
D17Mit191 17 31492136 to 31492230 94 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 191
Wdr4 17 31494323 to 31519974 25651 - protein coding gene WD repeat domain 4
Cpgi8945 17 31511710 to 31512733 1023 CpG island CpG island 8945
Tssr147287 17 31512217 to 31512233 16 - TSS region transcription start site region 147287
Tssr147288 17 31512253 to 31512324 71 - TSS region transcription start site region 147288
Cpgi8946 17 31519867 to 31520352 485 CpG island CpG island 8946
Tssr147289 17 31519916 to 31519980 64 - TSS region transcription start site region 147289
Ndufv3 17 31520115 to 31531326 11211 + protein coding gene NADH:ubiquinone oxidoreductase core subunit V3
Tssr143670 17 31520133 to 31520169 36 + TSS region transcription start site region 143670
Tssr143671 17 31520170 to 31520211 41 + TSS region transcription start site region 143671
Gm38099 17 31532291 to 31535460 3169 - unclassified gene predicted gene, 38099
4833413E03Rik 17 31557126 to 31559113 1987 + lincRNA gene RIKEN cDNA 4833413E03 gene
Tssr5084 17 31558007 to 31558014 7 - TSS region transcription start site region 5084
Tssr147290 17 31558029 to 31558066 37 - TSS region transcription start site region 147290
Tssr147291 17 31558067 to 31558082 15 - TSS region transcription start site region 147291
Tssr147292 17 31559560 to 31559575 15 - TSS region transcription start site region 147292
Cpgi8947 17 31563972 to 31565976 2004 CpG island CpG island 8947
Pknox1 17 31564749 to 31607684 42935 + protein coding gene Pbx/knotted 1 homeobox
Tssr143672 17 31564749 to 31564854 105 + TSS region transcription start site region 143672
Tssr143673 17 31564855 to 31564873 18 + TSS region transcription start site region 143673
Tssr143674 17 31564948 to 31564963 15 + TSS region transcription start site region 143674
Gm24970 17 31564962 to 31565043 81 - miRNA gene predicted gene, 24970
Tssr147293 17 31565681 to 31565691 10 - TSS region transcription start site region 147293
Tssr143675 17 31585881 to 31585912 31 + TSS region transcription start site region 143675
Tssr143676 17 31586370 to 31586374 4 + TSS region transcription start site region 143676
Tssr143677 17 31591719 to 31591759 40 + TSS region transcription start site region 143677
Tssr143678 17 31594822 to 31594839 17 + TSS region transcription start site region 143678
Cbs 17 31612623 to 31637199 24576 - protein coding gene cystathionine beta-synthase
Tssr147294 17 31633079 to 31633101 22 - TSS region transcription start site region 147294
Tssr147295 17 31633103 to 31633152 49 - TSS region transcription start site region 147295
Tssr147296 17 31633154 to 31633176 22 - TSS region transcription start site region 147296
Tssr143679 17 31636028 to 31636030 2 + TSS region transcription start site region 143679
Cpgi8948 17 31636272 to 31637744 1472 CpG island CpG island 8948
Tssr147297 17 31636505 to 31636526 21 - TSS region transcription start site region 147297
Tssr147298 17 31636583 to 31636594 11 - TSS region transcription start site region 147298
Tssr147299 17 31636603 to 31636624 21 - TSS region transcription start site region 147299
Tssr147300 17 31636631 to 31636652 21 - TSS region transcription start site region 147300
Tssr147301 17 31637135 to 31637185 50 - TSS region transcription start site region 147301
Rps2-ps8 17 31643856 to 31644806 950 - pseudogene ribosomal protein S2, pseudogene 8
Tssr147302 17 31644799 to 31644809 10 - TSS region transcription start site region 147302
U2af1 17 31647082 to 31658754 11672 - protein coding gene U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
Tssr147303 17 31654932 to 31654935 3 - TSS region transcription start site region 147303
Cpgi8949 17 31658048 to 31659370 1322 CpG island CpG island 8949
Tssr147304 17 31658729 to 31658766 37 - TSS region transcription start site region 147304
Mnctp1 17 31673397 to 31673397 0 QTL percent monocytes 1
Tssr143680 17 31677924 to 31677939 15 + TSS region transcription start site region 143680
Cryaa 17 31677933 to 31681724 3791 + protein coding gene crystallin, alpha A
Tssr147305 17 31678109 to 31678124 15 - TSS region transcription start site region 147305
Tssr147306 17 31678131 to 31678166 35 - TSS region transcription start site region 147306
Tssr147307 17 31678181 to 31678194 13 - TSS region transcription start site region 147307
Tssr147308 17 31678498 to 31678540 42 - TSS region transcription start site region 147308
D17Rua3 17 31678515 to 31679582 1067 DNA segment DNA segment, Chr 17, Rutgers University 3
Tssr143681 17 31678924 to 31678934 10 + TSS region transcription start site region 143681
Tssr143682 17 31679569 to 31679581 12 + TSS region transcription start site region 143682
Tssr143683 17 31679639 to 31679655 16 + TSS region transcription start site region 143683
Tssr143684 17 31681002 to 31681020 18 + TSS region transcription start site region 143684
Tssr143685 17 31681042 to 31681068 26 + TSS region transcription start site region 143685
Tssr143686 17 31681143 to 31681152 9 + TSS region transcription start site region 143686
Tssr143687 17 31681161 to 31681174 13 + TSS region transcription start site region 143687
Tssr5085 17 31681261 to 31681286 25 + TSS region transcription start site region 5085
Tssr147309 17 31681270 to 31681294 24 - TSS region transcription start site region 147309
Tssr143688 17 31681295 to 31681299 4 + TSS region transcription start site region 143688
Tssr143689 17 31681318 to 31681331 13 + TSS region transcription start site region 143689
Tssr5086 17 31681375 to 31681391 16 + TSS region transcription start site region 5086
Tssr143690 17 31681504 to 31681512 8 + TSS region transcription start site region 143690
Tssr147310 17 31681530 to 31681537 7 - TSS region transcription start site region 147310
Tssr147311 17 31681595 to 31681603 8 - TSS region transcription start site region 147311
Tssr143691 17 31681606 to 31681615 9 + TSS region transcription start site region 143691
Tssr143692 17 31681660 to 31681677 17 + TSS region transcription start site region 143692
Tssr143693 17 31681684 to 31681699 15 + TSS region transcription start site region 143693
Tssr147312 17 31681717 to 31681724 7 - TSS region transcription start site region 147312
Tssr147313 17 31684307 to 31684355 48 - TSS region transcription start site region 147313
Tssr147314 17 31690424 to 31690426 2 - TSS region transcription start site region 147314
Tssr147315 17 31692986 to 31693005 19 - TSS region transcription start site region 147315
Cpgi8950 17 31693374 to 31693768 394 CpG island CpG island 8950
D17Jcs77 17 31694351 to 31694553 202 DNA segment DNA segment, Chr 17, John C. Schimenti 77
Cpgi8951 17 31705381 to 31705660 279 CpG island CpG island 8951
Gm30187 17 31708196 to 31714241 6045 + lncRNA gene predicted gene, 30187
Gm30255 17 31726918 to 31731520 4602 + lncRNA gene predicted gene, 30255
Tssr147316 17 31729550 to 31729553 3 - TSS region transcription start site region 147316
Cpgi8952 17 31732207 to 31732857 650 CpG island CpG island 8952
Gm30316 17 31735708 to 31755634 19926 + lncRNA gene predicted gene, 30316