Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28829704-28969716

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brpf3 17 28800763 to 28838789 38026 + protein coding gene bromodomain and PHD finger containing, 3
Tssr143478 17 28847976 to 28847980 4 + TSS region transcription start site region 143478
Pnpla1os 17 28852055 to 28859508 7453 - antisense lncRNA gene patatin-like phospholipase domain containing 1, opposite strand
D17Jcs60 17 28852785 to 28852988 203 DNA segment DNA segment, Chr 17, John C. Schimenti 60
Cpgi8899 17 28858299 to 28858536 237 CpG island CpG island 8899
Pnpla1 17 28858411 to 28890309 31898 + protein coding gene patatin-like phospholipase domain containing 1
Tssr143479 17 28858466 to 28858499 33 + TSS region transcription start site region 143479
Tssr143480 17 28858511 to 28858553 42 + TSS region transcription start site region 143480
Tssr143481 17 28858565 to 28858573 8 + TSS region transcription start site region 143481
Tssr5057 17 28864746 to 28864747 1 + TSS region transcription start site region 5057
Tssr143482 17 28872603 to 28872608 5 + TSS region transcription start site region 143482
Tssr143483 17 28872618 to 28872627 9 + TSS region transcription start site region 143483
Cpgi8900 17 28876887 to 28877159 272 CpG island CpG island 8900
Cpgi8901 17 28879898 to 28880425 527 CpG island CpG island 8901
Tssr143484 17 28895745 to 28895754 9 + TSS region transcription start site region 143484
4930539E08Rik 17 28896392 to 28915324 18932 - protein coding gene RIKEN cDNA 4930539E08 gene
Cpgi8902 17 28899307 to 28899940 633 CpG island CpG island 8902
Tssr147156 17 28899704 to 28899716 12 - TSS region transcription start site region 147156
Tssr143485 17 28905229 to 28905248 19 + TSS region transcription start site region 143485
1700030A11Rik 17 28905265 to 28906771 1506 + antisense lncRNA gene RIKEN cDNA 1700030A11 gene
Cpgi8903 17 28909278 to 28909814 536 CpG island CpG island 8903
Tssr147157 17 28909382 to 28909407 25 - TSS region transcription start site region 147157
Tssr147158 17 28915314 to 28915330 16 - TSS region transcription start site region 147158
Gm16191 17 28925463 to 28937125 11662 + antisense lncRNA gene predicted gene 16191
Pxt1 17 28933986 to 28942262 8276 - protein coding gene peroxisomal, testis specific 1
Tssr147159 17 28942224 to 28942254 30 - TSS region transcription start site region 147159
Tssr147160 17 28942255 to 28942270 15 - TSS region transcription start site region 147160
Tssr147161 17 28943835 to 28943840 5 - TSS region transcription start site region 147161
Gm49868 17 28946571 to 28947195 624 - pseudogene predicted gene, 49868
1700063J08Rik 17 28951855 to 28952408 553 - bidirectional promoter lncRNA gene RIKEN cDNA 1700063J08 gene
Tssr143486 17 28951965 to 28951978 13 + TSS region transcription start site region 143486
Cpgi8904 17 28952110 to 28952833 723 CpG island CpG island 8904
Tssr143487 17 28952412 to 28952423 11 + TSS region transcription start site region 143487
Tssr143488 17 28952425 to 28952532 107 + TSS region transcription start site region 143488
Kctd20 17 28952448 to 28969549 17101 + protein coding gene potassium channel tetramerisation domain containing 20
Tssr5058 17 28952681 to 28952697 16 + TSS region transcription start site region 5058
D17Mit248 17 28956504 to 28956604 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 248
D17Dcr2 17 28956760 to 28956881 121 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 2