Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24117023-24645204

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Cpgi8707 17 24140887 to 24141966 1079 CpG island CpG island 8707
Tssr143003 17 24140915 to 24140936 21 + TSS region transcription start site region 143003
Tssr146695 17 24141542 to 24141591 49 - TSS region transcription start site region 146695
Gm33409 17 24141642 to 24142598 956 + lncRNA gene predicted gene, 33409
Gm50070 17 24145599 to 24147046 1447 - sense intronic lncRNA gene predicted gene, 50070
Tssr146696 17 24150866 to 24150881 15 - TSS region transcription start site region 146696
Tssr146697 17 24150886 to 24150907 21 - TSS region transcription start site region 146697
Tssr146698 17 24150910 to 24150928 18 - TSS region transcription start site region 146698
Tssr146699 17 24150942 to 24150950 8 - TSS region transcription start site region 146699
Cpgi8708 17 24151976 to 24152457 481 CpG island CpG island 8708
Tssr143004 17 24152089 to 24152100 11 + TSS region transcription start site region 143004
Amdhd2 17 24155833 to 24163733 7900 - protein coding gene amidohydrolase domain containing 2
Tssr143005 17 24162304 to 24162323 19 + TSS region transcription start site region 143005
Tssr143006 17 24162820 to 24162846 26 + TSS region transcription start site region 143006
Cpgi8709 17 24162933 to 24163885 952 CpG island CpG island 8709
Tssr146700 17 24163618 to 24163629 11 - TSS region transcription start site region 146700
Tssr146701 17 24163645 to 24163656 11 - TSS region transcription start site region 146701
Tssr146702 17 24163668 to 24163771 103 - TSS region transcription start site region 146702
Atp6v0c 17 24163866 to 24169429 5563 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit C
Tssr146703 17 24165044 to 24165067 23 - TSS region transcription start site region 146703
Tssr143007 17 24165258 to 24165269 11 + TSS region transcription start site region 143007
Tssr146704 17 24167430 to 24167437 7 - TSS region transcription start site region 146704
Cpgi8710 17 24168712 to 24170059 1347 CpG island CpG island 8710
Tssr146705 17 24168749 to 24168767 18 - TSS region transcription start site region 146705
Tssr143008 17 24168767 to 24168770 3 + TSS region transcription start site region 143008
Tssr146706 17 24168775 to 24168822 47 - TSS region transcription start site region 146706
Tssr146707 17 24168828 to 24168840 12 - TSS region transcription start site region 146707
Tssr146708 17 24169414 to 24169450 36 - TSS region transcription start site region 146708
Tssr5032 17 24169623 to 24169646 23 - TSS region transcription start site region 5032
Tssr146709 17 24169648 to 24169713 65 - TSS region transcription start site region 146709
Tssr143009 17 24169736 to 24169805 69 + TSS region transcription start site region 143009
Tssr143010 17 24169810 to 24169822 12 + TSS region transcription start site region 143010
Tssr143011 17 24169979 to 24169984 5 + TSS region transcription start site region 143011
Tssr146710 17 24170759 to 24170778 19 - TSS region transcription start site region 146710
Tssr146711 17 24170781 to 24170802 21 - TSS region transcription start site region 146711
Tssr146712 17 24170826 to 24170852 26 - TSS region transcription start site region 146712
Tssr143012 17 24170906 to 24170936 30 + TSS region transcription start site region 143012
Tssr143013 17 24170975 to 24171007 32 + TSS region transcription start site region 143013
Tssr143014 17 24171563 to 24171565 2 + TSS region transcription start site region 143014
Tssr146713 17 24171867 to 24171909 42 - TSS region transcription start site region 146713
Tssr143015 17 24172015 to 24172044 29 + TSS region transcription start site region 143015
Tssr143016 17 24172046 to 24172076 30 + TSS region transcription start site region 143016
Tbc1d24 17 24175431 to 24205562 30131 - protein coding gene TBC1 domain family, member 24
Tssr146714 17 24203093 to 24203106 13 - TSS region transcription start site region 146714
Ntn3 17 24203831 to 24209387 5556 - protein coding gene netrin 3
Cpgi8711 17 24204893 to 24207641 2748 CpG island CpG island 8711
Tssr146715 17 24205514 to 24205542 28 - TSS region transcription start site region 146715
Cpgi8712 17 24208502 to 24209632 1130 CpG island CpG island 8712
BC028777 17 24208861 to 24221730 12869 + unclassified non-coding RNA gene cDNA sequence BC028777
Tssr146716 17 24209377 to 24209416 39 - TSS region transcription start site region 146716
Cpgi8713 17 24211898 to 24212459 561 CpG island CpG island 8713
Tedc2 17 24215054 to 24220851 5797 - protein coding gene tubulin epsilon and delta complex 2
Cpgi8714 17 24220405 to 24220918 513 CpG island CpG island 8714
Tssr146717 17 24220617 to 24220641 24 - TSS region transcription start site region 146717
Tssr146718 17 24220695 to 24220704 9 - TSS region transcription start site region 146718
Tssr146719 17 24220708 to 24220737 29 - TSS region transcription start site region 146719
Tssr146720 17 24220738 to 24220803 65 - TSS region transcription start site region 146720
Ccnf 17 24223230 to 24251409 28179 - protein coding gene cyclin F
Tssr146721 17 24223987 to 24223995 8 - TSS region transcription start site region 146721
Mir5134 17 24234527 to 24234604 77 - miRNA gene microRNA 5134
Mir6965 17 24240884 to 24240947 63 - miRNA gene microRNA 6965
Cpgi8715 17 24250958 to 24251950 992 CpG island CpG island 8715
Tssr146722 17 24251322 to 24251381 59 - TSS region transcription start site region 146722
Tssr146723 17 24251382 to 24251397 15 - TSS region transcription start site region 146723
Tssr143017 17 24251660 to 24251679 19 + TSS region transcription start site region 143017
Tssr143018 17 24251964 to 24252010 46 + TSS region transcription start site region 143018
Tssr143019 17 24252584 to 24252589 5 + TSS region transcription start site region 143019
Abca17 17 24264259 to 24351068 86809 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 17
Tssr143020 17 24273997 to 24274001 4 + TSS region transcription start site region 143020
Gm24427 17 24304669 to 24304789 120 + miRNA gene predicted gene, 24427
Tssr146724 17 24316320 to 24316324 4 - TSS region transcription start site region 146724
D17Jcs14 17 24348701 to 24348935 234 DNA segment DNA segment, Chr 17, John C. Schimenti 14
Cpgi8716 17 24350823 to 24352855 2032 CpG island CpG island 8716
Tssr146725 17 24351053 to 24351064 11 - TSS region transcription start site region 146725
Tssr146726 17 24351072 to 24351108 36 - TSS region transcription start site region 146726
Tssr143021 17 24351937 to 24351948 11 + TSS region transcription start site region 143021
Tssr143022 17 24351954 to 24351968 14 + TSS region transcription start site region 143022
Tssr143023 17 24352017 to 24352028 11 + TSS region transcription start site region 143023
Abca3 17 24352023 to 24410204 58181 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 3
Tssr143024 17 24352037 to 24352149 112 + TSS region transcription start site region 143024
Gm25618 17 24362438 to 24362544 106 - snRNA gene predicted gene, 25618
D17Lon5 17 24378174 to 24378306 132 DNA segment DNA segment, Chr 17, London 5
Tssr143025 17 24398607 to 24398611 4 + TSS region transcription start site region 143025
D330041H03Rik 17 24409481 to 24414513 5032 - lncRNA gene RIKEN cDNA D330041H03 gene
Cpgi8717 17 24413760 to 24415433 1673 CpG island CpG island 8717
Tssr146727 17 24414397 to 24414451 54 - TSS region transcription start site region 146727
Tssr146728 17 24414470 to 24414484 14 - TSS region transcription start site region 146728
Tssr143026 17 24414640 to 24414691 51 + TSS region transcription start site region 143026
Rnps1 17 24414642 to 24425898 11256 + protein coding gene ribonucleic acid binding protein S1
Tssr143027 17 24414913 to 24414985 72 + TSS region transcription start site region 143027
Tssr146729 17 24415524 to 24415534 10 - TSS region transcription start site region 146729
Tssr143028 17 24419463 to 24419467 4 + TSS region transcription start site region 143028
Tssr143029 17 24424470 to 24424476 6 + TSS region transcription start site region 143029
Tssr143030 17 24425491 to 24425526 35 + TSS region transcription start site region 143030
Cpgi8718 17 24426417 to 24427115 698 CpG island CpG island 8718
Tssr143031 17 24426676 to 24426701 25 + TSS region transcription start site region 143031
Eci1 17 24426683 to 24439316 12633 + protein coding gene enoyl-Coenzyme A delta isomerase 1
Dnase1l2 17 24440081 to 24443105 3024 - protein coding gene deoxyribonuclease 1-like 2
Tssr146730 17 24440395 to 24440399 4 - TSS region transcription start site region 146730
Tssr146731 17 24442157 to 24442184 27 - TSS region transcription start site region 146731
Tssr146732 17 24443077 to 24443090 13 - TSS region transcription start site region 146732
Tssr146733 17 24443093 to 24443109 16 - TSS region transcription start site region 146733
E4f1 17 24443778 to 24455430 11652 - protein coding gene E4F transcription factor 1
Cpgi8719 17 24454606 to 24455577 971 CpG island CpG island 8719
Tssr143032 17 24454856 to 24454881 25 + TSS region transcription start site region 143032
BC026600 17 24454864 to 24457100 2236 unclassified gene cDNA sequence BC026600
Tssr146734 17 24455238 to 24455257 19 - TSS region transcription start site region 146734
Tssr146735 17 24455265 to 24455345 80 - TSS region transcription start site region 146735
4833447I15Rik 17 24461220 to 24470227 9007 - lncRNA gene RIKEN cDNA 4833447I15 gene
Cpgi8720 17 24469757 to 24471474 1717 CpG island CpG island 8720
Tssr143033 17 24470172 to 24470186 14 + TSS region transcription start site region 143033
Tssr143034 17 24470393 to 24470481 88 + TSS region transcription start site region 143034
Pgp 17 24470473 to 24471602 1129 + protein coding gene phosphoglycolate phosphatase
Tssr143035 17 24470486 to 24470503 17 + TSS region transcription start site region 143035
Tssr143036 17 24470821 to 24470835 14 + TSS region transcription start site region 143036
Mlst8 17 24473551 to 24479078 5527 - protein coding gene MTOR associated protein, LST8 homolog (S. cerevisiae)
Bricd5 17 24473884 to 24475469 1585 + protein coding gene BRICHOS domain containing 5
Tssr143037 17 24473895 to 24473922 27 + TSS region transcription start site region 143037
Tssr146736 17 24477591 to 24477604 13 - TSS region transcription start site region 146736
Tssr146737 17 24477611 to 24477622 11 - TSS region transcription start site region 146737
Cpgi8721 17 24478616 to 24479343 727 CpG island CpG island 8721
Tssr146738 17 24479034 to 24479083 49 - TSS region transcription start site region 146738
Gm50062 17 24483215 to 24485254 2039 + lincRNA gene predicted gene, 50062
Cpgi8722 17 24488007 to 24489657 1650 CpG island CpG island 8722
Tssr143038 17 24488404 to 24488450 46 + TSS region transcription start site region 143038
Tssr143039 17 24488583 to 24488666 83 + TSS region transcription start site region 143039
Caskin1 17 24488601 to 24508671 20070 + protein coding gene CASK interacting protein 1
Tssr143040 17 24488671 to 24488682 11 + TSS region transcription start site region 143040
Tssr143041 17 24488737 to 24488771 34 + TSS region transcription start site region 143041
Tssr143042 17 24488773 to 24488799 26 + TSS region transcription start site region 143042
Cpgi8723 17 24504900 to 24505551 651 CpG island CpG island 8723
Cpgi8724 17 24506412 to 24507356 944 CpG island CpG island 8724
Traf7 17 24508850 to 24527938 19088 - protein coding gene TNF receptor-associated factor 7
Tssr146739 17 24514977 to 24515013 36 - TSS region transcription start site region 146739
Cpgi8725 17 24527565 to 24528252 687 CpG island CpG island 8725
Tssr146740 17 24527814 to 24527829 15 - TSS region transcription start site region 146740
Tssr146741 17 24527830 to 24527884 54 - TSS region transcription start site region 146741
Tssr146742 17 24527896 to 24527907 11 - TSS region transcription start site region 146742
Tssr146743 17 24527925 to 24527935 10 - TSS region transcription start site region 146743
Tssr146744 17 24527937 to 24527951 14 - TSS region transcription start site region 146744
Tssr143043 17 24528243 to 24528264 21 + TSS region transcription start site region 143043
Rab26os 17 24528251 to 24528744 493 + antisense lncRNA gene RAB26, member RAS oncogene family, opposite strand
Snord60 17 24528476 to 24528553 77 + snoRNA gene small nucleolar RNA, C/D box 60
Rab26 17 24529054 to 24533747 4693 - protein coding gene RAB26, member RAS oncogene family
Tssr143044 17 24529107 to 24529108 1 + TSS region transcription start site region 143044
Cpgi8726 17 24533057 to 24533995 938 CpG island CpG island 8726
Tssr146745 17 24533709 to 24533732 23 - TSS region transcription start site region 146745
Gm33508 17 24533862 to 24546531 12669 + lncRNA gene predicted gene, 33508
Tssr143045 17 24533885 to 24533900 15 + TSS region transcription start site region 143045
Cpgi8727 17 24544753 to 24544914 161 CpG island CpG island 8727
Tssr143046 17 24548667 to 24548694 27 + TSS region transcription start site region 143046
Tssr143047 17 24548704 to 24548713 9 + TSS region transcription start site region 143047
Tssr143048 17 24549121 to 24549141 20 + TSS region transcription start site region 143048
Cpgi8728 17 24549563 to 24551086 1523 CpG island CpG island 8728
Pkd1 17 24549950 to 24596514 46564 + protein coding gene polycystin 1, transient receptor poteintial channel interacting
Tssr143049 17 24550025 to 24550033 8 + TSS region transcription start site region 143049
Tssr143050 17 24550045 to 24550062 17 + TSS region transcription start site region 143050
Tssr143051 17 24550064 to 24550098 34 + TSS region transcription start site region 143051
Tssr143052 17 24550103 to 24550116 13 + TSS region transcription start site region 143052
Tssr5033 17 24593139 to 24593152 13 + TSS region transcription start site region 5033
Gm24589 17 24594978 to 24595071 93 + miRNA gene predicted gene, 24589
Tsc2 17 24595816 to 24632627 36811 - protein coding gene tuberous sclerosis 2
Cpgi8729 17 24596821 to 24596981 160 CpG island CpG island 8729
Tssr146746 17 24599178 to 24599215 37 - TSS region transcription start site region 146746
Tssr146747 17 24608983 to 24609010 27 - TSS region transcription start site region 146747
Tssr146748 17 24614392 to 24614414 22 - TSS region transcription start site region 146748
Tssr146749 17 24614499 to 24614510 11 - TSS region transcription start site region 146749
Tssr146750 17 24614513 to 24614528 15 - TSS region transcription start site region 146750
Cpgi8730 17 24632232 to 24633028 796 CpG island CpG island 8730
Tssr146751 17 24632583 to 24632603 20 - TSS region transcription start site region 146751
Tssr146752 17 24632608 to 24632632 24 - TSS region transcription start site region 146752
Tssr143053 17 24632671 to 24632712 41 + TSS region transcription start site region 143053
Nthl1 17 24632682 to 24638838 6156 + protein coding gene nth (endonuclease III)-like 1 (E.coli)
Tssr143054 17 24632725 to 24632746 21 + TSS region transcription start site region 143054
Slc9a3r2 17 24639286 to 24650327 11041 - protein coding gene solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
Tssr143055 17 24639961 to 24640005 44 + TSS region transcription start site region 143055
Tssr146753 17 24640702 to 24640736 34 - TSS region transcription start site region 146753
Tssr143056 17 24640759 to 24640789 30 + TSS region transcription start site region 143056
Tssr146754 17 24644933 to 24644976 43 - TSS region transcription start site region 146754
Tssr146755 17 24644982 to 24644994 12 - TSS region transcription start site region 146755
Tssr146756 17 24645019 to 24645028 9 - TSS region transcription start site region 146756