Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24059893-24352641

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kctd5 17 24047734 to 24073485 25751 - protein coding gene potassium channel tetramerisation domain containing 5
Cpgi8706 17 24072956 to 24073745 789 CpG island CpG island 8706
Tssr146689 17 24073257 to 24073276 19 - TSS region transcription start site region 146689
Tssr146690 17 24073428 to 24073474 46 - TSS region transcription start site region 146690
Tssr146691 17 24073479 to 24073490 11 - TSS region transcription start site region 146691
Pdpk1 17 24073680 to 24150924 77244 - protein coding gene 3-phosphoinositide dependent protein kinase 1
Tssr146692 17 24078852 to 24078874 22 - TSS region transcription start site region 146692
Gm50071 17 24086864 to 24089879 3015 + antisense lncRNA gene predicted gene, 50071
Tssr146693 17 24097114 to 24097124 10 - TSS region transcription start site region 146693
Tssr146694 17 24098089 to 24098094 5 - TSS region transcription start site region 146694
Cpgi8707 17 24140887 to 24141966 1079 CpG island CpG island 8707
Tssr143003 17 24140915 to 24140936 21 + TSS region transcription start site region 143003
Tssr146695 17 24141542 to 24141591 49 - TSS region transcription start site region 146695
Gm33409 17 24141642 to 24142598 956 + lncRNA gene predicted gene, 33409
Gm50070 17 24145599 to 24147046 1447 - sense intronic lncRNA gene predicted gene, 50070
Tssr146696 17 24150866 to 24150881 15 - TSS region transcription start site region 146696
Tssr146697 17 24150886 to 24150907 21 - TSS region transcription start site region 146697
Tssr146698 17 24150910 to 24150928 18 - TSS region transcription start site region 146698
Tssr146699 17 24150942 to 24150950 8 - TSS region transcription start site region 146699
Cpgi8708 17 24151976 to 24152457 481 CpG island CpG island 8708
Tssr143004 17 24152089 to 24152100 11 + TSS region transcription start site region 143004
Amdhd2 17 24155833 to 24163733 7900 - protein coding gene amidohydrolase domain containing 2
Tssr143005 17 24162304 to 24162323 19 + TSS region transcription start site region 143005
Tssr143006 17 24162820 to 24162846 26 + TSS region transcription start site region 143006
Cpgi8709 17 24162933 to 24163885 952 CpG island CpG island 8709
Tssr146700 17 24163618 to 24163629 11 - TSS region transcription start site region 146700
Tssr146701 17 24163645 to 24163656 11 - TSS region transcription start site region 146701
Tssr146702 17 24163668 to 24163771 103 - TSS region transcription start site region 146702
Atp6v0c 17 24163866 to 24169429 5563 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit C
Tssr146703 17 24165044 to 24165067 23 - TSS region transcription start site region 146703
Tssr143007 17 24165258 to 24165269 11 + TSS region transcription start site region 143007
Tssr146704 17 24167430 to 24167437 7 - TSS region transcription start site region 146704
Cpgi8710 17 24168712 to 24170059 1347 CpG island CpG island 8710
Tssr146705 17 24168749 to 24168767 18 - TSS region transcription start site region 146705
Tssr143008 17 24168767 to 24168770 3 + TSS region transcription start site region 143008
Tssr146706 17 24168775 to 24168822 47 - TSS region transcription start site region 146706
Tssr146707 17 24168828 to 24168840 12 - TSS region transcription start site region 146707
Tssr146708 17 24169414 to 24169450 36 - TSS region transcription start site region 146708
Tssr5032 17 24169623 to 24169646 23 - TSS region transcription start site region 5032
Tssr146709 17 24169648 to 24169713 65 - TSS region transcription start site region 146709
Tssr143009 17 24169736 to 24169805 69 + TSS region transcription start site region 143009
Tssr143010 17 24169810 to 24169822 12 + TSS region transcription start site region 143010
Tssr143011 17 24169979 to 24169984 5 + TSS region transcription start site region 143011
Tssr146710 17 24170759 to 24170778 19 - TSS region transcription start site region 146710
Tssr146711 17 24170781 to 24170802 21 - TSS region transcription start site region 146711
Tssr146712 17 24170826 to 24170852 26 - TSS region transcription start site region 146712
Tssr143012 17 24170906 to 24170936 30 + TSS region transcription start site region 143012
Tssr143013 17 24170975 to 24171007 32 + TSS region transcription start site region 143013
Tssr143014 17 24171563 to 24171565 2 + TSS region transcription start site region 143014
Tssr146713 17 24171867 to 24171909 42 - TSS region transcription start site region 146713
Tssr143015 17 24172015 to 24172044 29 + TSS region transcription start site region 143015
Tssr143016 17 24172046 to 24172076 30 + TSS region transcription start site region 143016
Tbc1d24 17 24175431 to 24205562 30131 - protein coding gene TBC1 domain family, member 24
Tssr146714 17 24203093 to 24203106 13 - TSS region transcription start site region 146714
Ntn3 17 24203831 to 24209387 5556 - protein coding gene netrin 3
Cpgi8711 17 24204893 to 24207641 2748 CpG island CpG island 8711
Tssr146715 17 24205514 to 24205542 28 - TSS region transcription start site region 146715
Cpgi8712 17 24208502 to 24209632 1130 CpG island CpG island 8712
BC028777 17 24208861 to 24221730 12869 + unclassified non-coding RNA gene cDNA sequence BC028777
Tssr146716 17 24209377 to 24209416 39 - TSS region transcription start site region 146716
Cpgi8713 17 24211898 to 24212459 561 CpG island CpG island 8713
Tedc2 17 24215054 to 24220851 5797 - protein coding gene tubulin epsilon and delta complex 2
Cpgi8714 17 24220405 to 24220918 513 CpG island CpG island 8714
Tssr146717 17 24220617 to 24220641 24 - TSS region transcription start site region 146717
Tssr146718 17 24220695 to 24220704 9 - TSS region transcription start site region 146718
Tssr146719 17 24220708 to 24220737 29 - TSS region transcription start site region 146719
Tssr146720 17 24220738 to 24220803 65 - TSS region transcription start site region 146720
Ccnf 17 24223230 to 24251409 28179 - protein coding gene cyclin F
Tssr146721 17 24223987 to 24223995 8 - TSS region transcription start site region 146721
Mir5134 17 24234527 to 24234604 77 - miRNA gene microRNA 5134
Mir6965 17 24240884 to 24240947 63 - miRNA gene microRNA 6965
Cpgi8715 17 24250958 to 24251950 992 CpG island CpG island 8715
Tssr146722 17 24251322 to 24251381 59 - TSS region transcription start site region 146722
Tssr146723 17 24251382 to 24251397 15 - TSS region transcription start site region 146723
Tssr143017 17 24251660 to 24251679 19 + TSS region transcription start site region 143017
Tssr143018 17 24251964 to 24252010 46 + TSS region transcription start site region 143018
Tssr143019 17 24252584 to 24252589 5 + TSS region transcription start site region 143019
Abca17 17 24264259 to 24351068 86809 - protein coding gene ATP-binding cassette, sub-family A (ABC1), member 17
Tssr143020 17 24273997 to 24274001 4 + TSS region transcription start site region 143020
Gm24427 17 24304669 to 24304789 120 + miRNA gene predicted gene, 24427
Tssr146724 17 24316320 to 24316324 4 - TSS region transcription start site region 146724
D17Jcs14 17 24348701 to 24348935 234 DNA segment DNA segment, Chr 17, John C. Schimenti 14
Cpgi8716 17 24350823 to 24352855 2032 CpG island CpG island 8716
Tssr146725 17 24351053 to 24351064 11 - TSS region transcription start site region 146725
Tssr146726 17 24351072 to 24351108 36 - TSS region transcription start site region 146726
Tssr143021 17 24351937 to 24351948 11 + TSS region transcription start site region 143021
Tssr143022 17 24351954 to 24351968 14 + TSS region transcription start site region 143022
Tssr143023 17 24352017 to 24352028 11 + TSS region transcription start site region 143023
Abca3 17 24352023 to 24410204 58181 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 3
Tssr143024 17 24352037 to 24352149 112 + TSS region transcription start site region 143024