Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:22402118-23332141

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr142906 17 22424215 to 22424241 26 + TSS region transcription start site region 142906
Zfp946 17 22424222 to 22456689 32467 + protein coding gene zinc finger protein 946
Tssr142907 17 22424248 to 22424260 12 + TSS region transcription start site region 142907
Tssr142908 17 22424261 to 22424276 15 + TSS region transcription start site region 142908
Tssr142909 17 22429258 to 22429263 5 + TSS region transcription start site region 142909
D17Jcs136 17 22449687 to 22449932 245 DNA segment DNA segment, Chr 17, John C. Schimenti 136
Gm49955 17 22486227 to 22486376 149 - pseudogene predicted gene, 49955
Gm49956 17 22486555 to 22486750 195 + pseudogene predicted gene, 49956
Gm19012 17 22494622 to 22495562 940 + pseudogene predicted gene, 19012
Tssr142910 17 22497378 to 22497385 7 + TSS region transcription start site region 142910
Gm30818 17 22497390 to 22521967 24577 + lncRNA gene predicted gene, 30818
Tssr142911 17 22497395 to 22497405 10 + TSS region transcription start site region 142911
Tssr142912 17 22497440 to 22497460 20 + TSS region transcription start site region 142912
Tssr142913 17 22501524 to 22501527 3 + TSS region transcription start site region 142913
Tssr146605 17 22519380 to 22519382 2 - TSS region transcription start site region 146605
Vmn2r111 17 22547941 to 22573273 25332 - protein coding gene vomeronasal 2, receptor 111
Vmn2r112 17 22601148 to 22619133 17985 + protein coding gene vomeronasal 2, receptor 112
D17Jcs137 17 22629350 to 22629564 214 DNA segment DNA segment, Chr 17, John C. Schimenti 137
Tssr142914 17 22674308 to 22674328 20 + TSS region transcription start site region 142914
Tssr142915 17 22674332 to 22674342 10 + TSS region transcription start site region 142915
Tssr142916 17 22674344 to 22674379 35 + TSS region transcription start site region 142916
Tssr142917 17 22674381 to 22674388 7 + TSS region transcription start site region 142917
Tssr142918 17 22674390 to 22674423 33 + TSS region transcription start site region 142918
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Gm9805 17 22687720 to 22690460 2740 + pseudogene predicted gene 9805
Gm20008 17 22713866 to 22716937 3071 - pseudogene predicted gene, 20008
Tssr142919 17 22734826 to 22734858 32 + TSS region transcription start site region 142919
Gm5224 17 22734963 to 22735380 417 + pseudogene predicted pseudogene 5224
Cpgi8667 17 22739599 to 22739943 344 CpG island CpG island 8667
Tssr146606 17 22739892 to 22739937 45 - TSS region transcription start site region 146606
Gm5493 17 22739945 to 22751509 11564 + lincRNA gene predicted gene 5493
Gm16386 17 22776230 to 22817747 41517 - lincRNA gene predicted gene 16386
D17Jcs138 17 22842970 to 22843213 243 DNA segment DNA segment, Chr 17, John C. Schimenti 138
Zfp945 17 22846697 to 22867134 20437 - protein coding gene zinc finger protein 945
Tssr146607 17 22864161 to 22864164 3 - TSS region transcription start site region 146607
Tssr146608 17 22867075 to 22867110 35 - TSS region transcription start site region 146608
Tssr146609 17 22867118 to 22867141 23 - TSS region transcription start site region 146609
Tssr146610 17 22867158 to 22867190 32 - TSS region transcription start site region 146610
Gm32892 17 22873486 to 22874001 515 + pseudogene predicted gene, 32892
Tssr142920 17 22876348 to 22876367 19 + TSS region transcription start site region 142920
Tssr142921 17 22876454 to 22876478 24 + TSS region transcription start site region 142921
Tssr142922 17 22878120 to 22878132 12 + TSS region transcription start site region 142922
Gm18214 17 22895714 to 22897595 1881 + pseudogene predicted gene, 18214
Vmn2r-ps128 17 22916887 to 22932941 16054 - pseudogene vomeronasal 2, receptor, pseudogene 128
Vmn2r113 17 22943184 to 22958814 15630 + protein coding gene vomeronasal 2, receptor 113
Vmn2r-ps129 17 23004971 to 23006659 1688 + pseudogene vomeronasal 2, receptor, pseudogene 129
Gm18415 17 23014387 to 23015033 646 - pseudogene predicted gene, 18415
Gm18396 17 23045498 to 23045858 360 - pseudogene predicted gene, 18396
Vmn2r-ps130 17 23076505 to 23077416 911 + pseudogene vomeronasal 2, receptor, pseudogene 130
Gm18397 17 23086099 to 23086663 564 - pseudogene predicted gene, 18397
Gm18416 17 23116958 to 23117510 552 - pseudogene predicted gene, 18416
Vmn2r-ps131 17 23147808 to 23150667 2859 + pseudogene vomeronasal 2, receptor, pseudogene 131
Gm3748 17 23161576 to 23161912 336 - pseudogene predicted gene 3748
Vmn2r-ps132 17 23167359 to 23167988 629 - pseudogene vomeronasal 2, receptor, pseudogene 132
Zfp40 17 23173869 to 23193252 19383 - protein coding gene zinc finger protein 40
Tssr146611 17 23193144 to 23193173 29 - TSS region transcription start site region 146611
Tssr146612 17 23193175 to 23193208 33 - TSS region transcription start site region 146612
Tssr146613 17 23193216 to 23193258 42 - TSS region transcription start site region 146613
D17Jcs139 17 23201468 to 23201701 233 DNA segment DNA segment, Chr 17, John C. Schimenti 139
Vmn2r-ps133 17 23241668 to 23277178 35510 - pseudogene vomeronasal 2, receptor, pseudogene 133
Vmn2r114 17 23290934 to 23312313 21379 - protein coding gene vomeronasal 2, receptor 114