Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:13189273-14061378

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49898 17 13195878 to 13204448 8570 + lincRNA gene predicted gene, 49898
Gm10512 17 13205042 to 13206209 1167 + lncRNA gene predicted gene 10512
Smok2a 17 13221188 to 13227658 6470 + protein coding gene sperm motility kinase 2A
Tssr142710 17 13230210 to 13230214 4 + TSS region transcription start site region 142710
Smok2b 17 13230263 to 13237189 6926 + protein coding gene sperm motility kinase 2B
Gm26500 17 13249895 to 13250000 105 - snRNA gene predicted gene, 26500
Gm36589 17 13319921 to 13327352 7431 - lncRNA gene predicted gene, 36589
Gm36684 17 13330748 to 13333842 3094 + lincRNA gene predicted gene, 36684
Gpr31c 17 13344829 to 13345786 957 - pseudogene G protein-coupled receptor 31, D17Leh66c region
Tssr146480 17 13345800 to 13345802 2 - TSS region transcription start site region 146480
Gm36537 17 13349818 to 13354571 4753 - lncRNA gene predicted gene, 36537
Tcp10c 17 13354572 to 13377223 22651 + protein coding gene t-complex protein 10c
Gm19283 17 13384026 to 13385580 1554 - pseudogene predicted gene, 19283
Gm49934 17 13385186 to 13396325 11139 - unclassified gene predicted gene, 49934
Gm8597 17 13394025 to 13404191 10166 - pseudogene predicted gene 8597
Gm25730 17 13399042 to 13399206 164 - snRNA gene predicted gene, 25730
Rnu6 17 13432033 to 13432139 106 - snRNA gene U6 small nuclear RNA
D17Mit222b 17 13467561 to 13467669 108 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 222b
2700054A10Rik 17 13487021 to 13554094 67073 - lincRNA gene RIKEN cDNA 2700054A10 gene
Gm49936 17 13489273 to 13761378 272105 - lincRNA gene predicted gene, 49936
Gm16050 17 13500954 to 13511193 10239 + lincRNA gene predicted gene 16050
Gm8603 17 13516755 to 13518269 1514 + pseudogene predicted gene 8603
Smok4a 17 13521456 to 13528433 6977 + pseudogene sperm motility kinase 4A
Gm26375 17 13534064 to 13534169 105 - snRNA gene predicted gene, 26375
Tssr5008 17 13590953 to 13590980 27 + TSS region transcription start site region 5008
Tssr5009 17 13590981 to 13590991 10 + TSS region transcription start site region 5009
Tssr5010 17 13654842 to 13654850 8 + TSS region transcription start site region 5010
Gm41530 17 13658119 to 13665688 7569 + lncRNA gene predicted gene, 41530
Tssr5011 17 13659358 to 13659382 24 + TSS region transcription start site region 5011
Tssr146481 17 13674730 to 13674742 12 - TSS region transcription start site region 146481
Gm24867 17 13675376 to 13675482 106 + snRNA gene predicted gene, 24867
Gm16046 17 13675662 to 13683516 7854 - lincRNA gene predicted gene 16046
Tssr146482 17 13683485 to 13683523 38 - TSS region transcription start site region 146482
Tcte2 17 13716436 to 13761394 44958 - protein coding gene t-complex-associated testis expressed 2
Tssr146483 17 13741550 to 13741558 8 - TSS region transcription start site region 146483
Tssr146484 17 13741664 to 13741686 22 - TSS region transcription start site region 146484
Cpgi8624 17 13759807 to 13761952 2145 CpG island CpG island 8624
Tssr142711 17 13760292 to 13760335 43 + TSS region transcription start site region 142711
Tssr146485 17 13760354 to 13760402 48 - TSS region transcription start site region 146485
Tssr146486 17 13760404 to 13760426 22 - TSS region transcription start site region 146486
Tssr142712 17 13760502 to 13760600 98 + TSS region transcription start site region 142712
Afdn 17 13760541 to 13905798 145257 + protein coding gene afadin, adherens junction formation factor
Tssr146487 17 13761364 to 13761410 46 - TSS region transcription start site region 146487
Tssr146488 17 13761416 to 13761425 9 - TSS region transcription start site region 146488
Tssr146489 17 13761441 to 13761452 11 - TSS region transcription start site region 146489
Tssr142713 17 13779999 to 13780030 31 + TSS region transcription start site region 142713
Asrq8 17 13809908 to 13809908 0 QTL acoustic startle response 8
Tssr142714 17 13846088 to 13846093 5 + TSS region transcription start site region 142714
Tssr142715 17 13846095 to 13846119 24 + TSS region transcription start site region 142715
Tssr142716 17 13846153 to 13846160 7 + TSS region transcription start site region 142716
Tssr142717 17 13846172 to 13846183 11 + TSS region transcription start site region 142717
Tssr142718 17 13846191 to 13846196 5 + TSS region transcription start site region 142718
Tssr142719 17 13846757 to 13846766 9 + TSS region transcription start site region 142719
Tssr142720 17 13850050 to 13850055 5 + TSS region transcription start site region 142720
Gm3355 17 13862317 to 13862803 486 - pseudogene predicted gene 3355
Tssr5012 17 13867565 to 13867596 31 + TSS region transcription start site region 5012
Tssr142721 17 13874478 to 13874500 22 + TSS region transcription start site region 142721
Tssr142722 17 13874522 to 13874537 15 + TSS region transcription start site region 142722
Tssr142723 17 13874538 to 13874557 19 + TSS region transcription start site region 142723
Tssr142724 17 13874562 to 13874582 20 + TSS region transcription start site region 142724
Tssr142725 17 13874901 to 13874912 11 + TSS region transcription start site region 142725
Tssr142726 17 13874916 to 13874926 10 + TSS region transcription start site region 142726
Tssr146490 17 13899204 to 13899211 7 - TSS region transcription start site region 146490
Gm49121 17 13911248 to 13936778 25530 + pseudogene predicted gene, 49121
Gm7168 17 13948373 to 13950678 2305 + protein coding gene predicted gene 7168
Gm33889 17 13991607 to 13998962 7355 - lncRNA gene predicted gene, 33889
Gm7356 17 14000224 to 14003393 3169 - protein coding gene predicted gene 7356
Gm34107 17 14050060 to 14057117 7057 - lncRNA gene predicted gene, 34107
Gm7358 17 14057225 to 14059531 2306 - protein coding gene predicted gene 7358