Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:92693054-93613070

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aod1a 16 35626273 to 92776120 57149847 QTL autoimmune ovarian dysgenesis 1a
Del(16App-Runx1)5Yah 16 84952666 to 92826074 7873408 chromosomal deletion deletion, Chr 16, Yann Herault 5
Runx1 16 92601466 to 92826074 224608 - protein coding gene runt related transcription factor 1
A630044M17Rik 16 92691405 to 92694945 3540 unclassified gene RIKEN cDNA A630044M17 gene
Tssr142143 16 92694922 to 92694926 4 - TSS region transcription start site region 142143
Tssr142144 16 92695066 to 92695089 23 - TSS region transcription start site region 142144
Tssr142145 16 92695218 to 92695231 13 - TSS region transcription start site region 142145
Cpgi8474 16 92695291 to 92695988 697 CpG island CpG island 8474
Cpgi8475 16 92696644 to 92699157 2513 CpG island CpG island 8475
Tssr142146 16 92697109 to 92697117 8 - TSS region transcription start site region 142146
Tssr142147 16 92697315 to 92697347 32 - TSS region transcription start site region 142147
Cpgi8476 16 92699827 to 92700052 225 CpG island CpG island 8476
A430042E23Rik 16 92726177 to 92729510 3333 unclassified gene RIKEN cDNA A430042E23 gene
Tssr142148 16 92727214 to 92727218 4 - TSS region transcription start site region 142148
Tssr142149 16 92739498 to 92739499 1 - TSS region transcription start site region 142149
Gm30281 16 92761922 to 92767240 5318 + lncRNA gene predicted gene, 30281
Tssr142150 16 92762162 to 92762173 11 - TSS region transcription start site region 142150
Tssr142151 16 92775297 to 92775302 5 - TSS region transcription start site region 142151
D16Mit51 16 92775966 to 92776120 154 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 51
Tssr142152 16 92776112 to 92776130 18 - TSS region transcription start site region 142152
Tssr142153 16 92776498 to 92776515 17 - TSS region transcription start site region 142153
Tssr142154 16 92776838 to 92776847 9 - TSS region transcription start site region 142154
Tssr142155 16 92776872 to 92776885 13 - TSS region transcription start site region 142155
Tssr142156 16 92789347 to 92789352 5 - TSS region transcription start site region 142156
Tssr142157 16 92792295 to 92792303 8 - TSS region transcription start site region 142157
Tssr142158 16 92793946 to 92793954 8 - TSS region transcription start site region 142158
Tssr142159 16 92797349 to 92797381 32 - TSS region transcription start site region 142159
Tssr142160 16 92801441 to 92801490 49 - TSS region transcription start site region 142160
Cpgi8477 16 92801635 to 92801822 187 CpG island CpG island 8477
Tssr142161 16 92808965 to 92808981 16 - TSS region transcription start site region 142161
Tssr142162 16 92817030 to 92817055 25 - TSS region transcription start site region 142162
Tssr142163 16 92817926 to 92817940 14 - TSS region transcription start site region 142163
Tssr139489 16 92818803 to 92818814 11 + TSS region transcription start site region 139489
Tssr142164 16 92822064 to 92822069 5 - TSS region transcription start site region 142164
Tssr139490 16 92823839 to 92823853 14 + TSS region transcription start site region 139490
Tssr142165 16 92824476 to 92824507 31 - TSS region transcription start site region 142165
Tssr139491 16 92824599 to 92824613 14 + TSS region transcription start site region 139491
Tssr139492 16 92824631 to 92824639 8 + TSS region transcription start site region 139492
Tssr142166 16 92825535 to 92825548 13 - TSS region transcription start site region 142166
Tssr142167 16 92825561 to 92825572 11 - TSS region transcription start site region 142167
Tssr142168 16 92825605 to 92825641 36 - TSS region transcription start site region 142168
Tssr142169 16 92825751 to 92825766 15 - TSS region transcription start site region 142169
Tssr142170 16 92825771 to 92825782 11 - TSS region transcription start site region 142170
Tssr142171 16 92825791 to 92825821 30 - TSS region transcription start site region 142171
Tssr142172 16 92825835 to 92825846 11 - TSS region transcription start site region 142172
Tssr142173 16 92825922 to 92825931 9 - TSS region transcription start site region 142173
Tssr142174 16 92825935 to 92825946 11 - TSS region transcription start site region 142174
Tssr142175 16 92825987 to 92826000 13 - TSS region transcription start site region 142175
Tssr142176 16 92826004 to 92826080 76 - TSS region transcription start site region 142176
Tssr142177 16 92826093 to 92826102 9 - TSS region transcription start site region 142177
Tssr4962 16 92831274 to 92831290 16 - TSS region transcription start site region 4962
Gm49723 16 92861877 to 92874472 12595 + lincRNA gene predicted gene, 49723
Tssr139493 16 92946799 to 92946823 24 + TSS region transcription start site region 139493
Tssr139494 16 92946832 to 92946839 7 + TSS region transcription start site region 139494
Gm41499 16 92956959 to 92959120 2161 + lncRNA gene predicted gene, 41499
Tssr139495 16 92995465 to 92995508 43 + TSS region transcription start site region 139495
Tssr139496 16 92995774 to 92995779 5 + TSS region transcription start site region 139496
Tssr4963 16 93002750 to 93002755 5 + TSS region transcription start site region 4963
Gm28003 16 93072755 to 93072822 67 + miRNA gene predicted gene, 28003
Tssr139497 16 93104146 to 93104150 4 + TSS region transcription start site region 139497
Tssr142178 16 93123092 to 93123096 4 - TSS region transcription start site region 142178
Tssr139498 16 93124007 to 93124029 22 + TSS region transcription start site region 139498
Tssr142179 16 93127754 to 93127775 21 - TSS region transcription start site region 142179
Tssr142180 16 93127792 to 93127805 13 - TSS region transcription start site region 142180
Gm30474 16 93127826 to 93132040 4214 - lncRNA gene predicted gene, 30474
Tssr142181 16 93127921 to 93127934 13 - TSS region transcription start site region 142181
D16Mit86 16 93134067 to 93134194 127 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 86
Tssr142182 16 93142059 to 93142072 13 - TSS region transcription start site region 142182
Tssr142183 16 93142078 to 93142092 14 - TSS region transcription start site region 142183
Tssr142184 16 93142151 to 93142163 12 - TSS region transcription start site region 142184
Tssr142185 16 93142192 to 93142254 62 - TSS region transcription start site region 142185
Tssr142186 16 93142263 to 93142275 12 - TSS region transcription start site region 142186
Tssr139499 16 93144328 to 93144340 12 + TSS region transcription start site region 139499
Tssr142187 16 93147699 to 93147710 11 - TSS region transcription start site region 142187
Tssr142188 16 93150440 to 93150444 4 - TSS region transcription start site region 142188
Tssr139500 16 93153054 to 93153070 16 + TSS region transcription start site region 139500
Tssr139501 16 93153299 to 93153333 34 + TSS region transcription start site region 139501
Tssr142189 16 93154058 to 93154071 13 - TSS region transcription start site region 142189
Gm30530 16 93184202 to 93193795 9593 - lncRNA gene predicted gene, 30530
41.MHAa75d5.seq 16 93218782 to 93218944 162 DNA segment DNA segment, Chr 16, 41.MHAa75d5.seq
Gm30588 16 93262363 to 93263467 1104 + lncRNA gene predicted gene, 30588
D16Jhu21 16 93292910 to 93293137 227 DNA segment DNA segment, Chr 16, Johns Hopkins University 21
1810053B23Rik 16 93343716 to 93359543 15827 - lncRNA gene RIKEN cDNA 1810053B23 gene
D16Jhu22 16 93352647 to 93352812 165 DNA segment DNA segment, Chr 16, Johns Hopkins University 22
Tssr142190 16 93354073 to 93354086 13 - TSS region transcription start site region 142190
Tssr142191 16 93358710 to 93358730 20 - TSS region transcription start site region 142191
Tssr142192 16 93359536 to 93359550 14 - TSS region transcription start site region 142192
Tssr142193 16 93365319 to 93365343 24 - TSS region transcription start site region 142193
1810044K17Rik 16 93368239 to 93369029 790 + lincRNA gene RIKEN cDNA 1810044K17 gene
Tssr139502 16 93368253 to 93368267 14 + TSS region transcription start site region 139502
Tssr139503 16 93368414 to 93368431 17 + TSS region transcription start site region 139503
Mir802 16 93369720 to 93369816 96 + miRNA gene microRNA 802
1700029J03Rik 16 93396815 to 93458872 62057 - lincRNA gene RIKEN cDNA 1700029J03 gene
Tssr4964 16 93424276 to 93424280 4 + TSS region transcription start site region 4964
D16Jhu24 16 93451624 to 93451835 211 DNA segment DNA segment, Chr 16, Johns Hopkins University 24
Cpgi8478 16 93458314 to 93458570 256 CpG island CpG island 8478
Gm30695 16 93472167 to 93487074 14907 - lincRNA gene predicted gene, 30695
Cpgi8479 16 93489460 to 93489970 510 CpG island CpG island 8479
Tssr142194 16 93490287 to 93490294 7 - TSS region transcription start site region 142194
D16Jhu25 16 93527179 to 93527374 195 DNA segment DNA segment, Chr 16, Johns Hopkins University 25
Gm49725 16 93532388 to 93534042 1654 + lincRNA gene predicted gene, 49725
Tssr139504 16 93532408 to 93532427 19 + TSS region transcription start site region 139504
Tssr4965 16 93547775 to 93547779 4 + TSS region transcription start site region 4965
Setd4 16 93583457 to 93604063 20606 - protein coding gene SET domain containing 4
Tssr142195 16 93586561 to 93586594 33 - TSS region transcription start site region 142195
Tssr139505 16 93591159 to 93591185 26 + TSS region transcription start site region 139505
Gm49961 16 93591401 to 93597760 6359 + antisense lncRNA gene predicted gene, 49961
Tssr142196 16 93598360 to 93598361 1 - TSS region transcription start site region 142196
Cpgi8480 16 93603514 to 93604290 776 CpG island CpG island 8480
Gm9510 16 93603762 to 93604967 1205 unclassified gene predicted gene 9510
Tssr139506 16 93603831 to 93603847 16 + TSS region transcription start site region 139506
Tssr142197 16 93604040 to 93604077 37 - TSS region transcription start site region 142197
Tssr142198 16 93604783 to 93604798 15 - TSS region transcription start site region 142198
Cpgi8481 16 93607695 to 93608419 724 CpG island CpG island 8481
Tssr139507 16 93607816 to 93607829 13 + TSS region transcription start site region 139507
Tssr139508 16 93607831 to 93607896 65 + TSS region transcription start site region 139508
Dp(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 chromosomal duplication duplication, Chr 16, H R Reeves 1
Cbr1 16 93607837 to 93610349 2512 + protein coding gene carbonyl reductase 1
Del(16Cbr1-Fam3b)1Rhr 16 93607837 to 97504936 3897099 cytogenetic marker deletion, Chr16, R H Reeves 1
Tssr139509 16 93607904 to 93607919 15 + TSS region transcription start site region 139509