Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87980199-88600226

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950
Gm41486 16 88224657 to 88226200 1543 + lncRNA gene predicted gene, 41486
Tssr141951 16 88225432 to 88225446 14 - TSS region transcription start site region 141951
Tssr139242 16 88225518 to 88225544 26 + TSS region transcription start site region 139242
Cpgi8404 16 88289377 to 88290583 1206 CpG island CpG island 8404
Tssr141952 16 88290186 to 88290197 11 - TSS region transcription start site region 141952
Tssr141953 16 88290199 to 88290226 27 - TSS region transcription start site region 141953
Gm33255 16 88367902 to 88381696 13794 - lincRNA gene predicted gene, 33255
4930420G21Rik 16 88376609 to 88443450 66841 + lincRNA gene RIKEN cDNA 4930420G21 gene
Gm46546 16 88459945 to 88460193 248 + pseudogene predicted gene, 46546
Cldn17 16 88505807 to 88506978 1171 - protein coding gene claudin 17
Tssr141954 16 88506956 to 88506965 9 - TSS region transcription start site region 141954
Tssr141955 16 88506971 to 88506994 23 - TSS region transcription start site region 141955
Cldn8 16 88560828 to 88563183 2355 - protein coding gene claudin 8
Cpgi8405 16 88562388 to 88562732 344 CpG island CpG island 8405
Tssr141956 16 88563019 to 88563026 7 - TSS region transcription start site region 141956
Tssr141957 16 88563058 to 88563070 12 - TSS region transcription start site region 141957
Tssr141958 16 88563107 to 88563118 11 - TSS region transcription start site region 141958
Tssr141959 16 88563130 to 88563141 11 - TSS region transcription start site region 141959
Tssr141960 16 88563144 to 88563147 3 - TSS region transcription start site region 141960
Tssr141961 16 88563149 to 88563164 15 - TSS region transcription start site region 141961
Tssr141962 16 88563166 to 88563200 34 - TSS region transcription start site region 141962
Tssr141963 16 88563201 to 88563214 13 - TSS region transcription start site region 141963
D16Ium45 16 88581459 to 88581618 159 DNA segment DNA segment, Chr 16, Indiana University Medical 45
Gm33372 16 88592288 to 88596750 4462 - lncRNA gene predicted gene, 33372