Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:87728354-88217206

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20 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bach1 16 87698954 to 87733346 34392 + protein coding gene BTB and CNC homology 1, basic leucine zipper transcription factor 1
Tssr139236 16 87729071 to 87729084 13 + TSS region transcription start site region 139236
Tssr139237 16 87729737 to 87729759 22 + TSS region transcription start site region 139237
Tssr139238 16 87731521 to 87731525 4 + TSS region transcription start site region 139238
Tssr139239 16 87732652 to 87732658 6 + TSS region transcription start site region 139239
Cpgi8403 16 87736060 to 87736288 228 CpG island CpG island 8403
Tssr141948 16 87736900 to 87736926 26 - TSS region transcription start site region 141948
Gm32925 16 87737943 to 87799641 61698 + lncRNA gene predicted gene, 32925
D16Mit191 16 87755787 to 87755907 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 191
Gm23994 16 87761556 to 87761643 87 - snoRNA gene predicted gene, 23994
Tssr139240 16 87787540 to 87787551 11 + TSS region transcription start site region 139240
Tssr139241 16 87823756 to 87823761 5 + TSS region transcription start site region 139241
2810407A14Rik 16 87823950 to 87872183 48233 + lincRNA gene RIKEN cDNA 2810407A14 gene
Grik1 16 87895900 to 88290265 394365 - protein coding gene glutamate receptor, ionotropic, kainate 1
Tssr141949 16 87902275 to 87902280 5 - TSS region transcription start site region 141949
4930590A17Rik 16 87933354 to 88012206 78852 + lncRNA gene RIKEN cDNA 4930590A17 gene
D16Ium72 16 87965542 to 87965723 181 DNA segment DNA segment, Chr 16, Indiana University Medical 72
Gm33207 16 88012366 to 88016443 4077 + lncRNA gene predicted gene, 33207
Gm46553 16 88134754 to 88142516 7762 - lncRNA gene predicted gene, 46553
Tssr141950 16 88167438 to 88167439 1 - TSS region transcription start site region 141950