Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:78366756-79256876

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Btg3 16 78359860 to 78377181 17321 - protein coding gene B cell translocation gene 3
Tssr141837 16 78375019 to 78375029 10 - TSS region transcription start site region 141837
Cpgi8377 16 78375866 to 78377389 1523 CpG island CpG island 8377
Tssr139124 16 78376117 to 78376122 5 + TSS region transcription start site region 139124
Tssr141838 16 78376758 to 78376818 60 - TSS region transcription start site region 141838
Tssr141839 16 78410174 to 78410190 16 - TSS region transcription start site region 141839
Gm25038 16 78423730 to 78423859 129 - snoRNA gene predicted gene, 25038
D16Ertd534e 16 78432118 to 78432355 237 DNA segment DNA segment, Chr 16, ERATO Doi 534, expressed
Tssr139125 16 78440169 to 78440177 8 + TSS region transcription start site region 139125
1700015P03Rik 16 78449309 to 78450122 813 unclassified gene RIKEN cDNA 1700015P03 gene
4930572P05Rik 16 78454710 to 78455328 618 unclassified gene RIKEN cDNA 4930572P05 gene
Gm49603 16 78477742 to 78480539 2797 - unclassified gene predicted gene, 49603
Gm49604 16 78489680 to 78492955 3275 + unclassified gene predicted gene, 49604
D16Ertd472e 16 78540336 to 78576688 36352 - protein coding gene DNA segment, Chr 16, ERATO Doi 472, expressed
Tssr141840 16 78546642 to 78546667 25 - TSS region transcription start site region 141840
Tssr141841 16 78559549 to 78559552 3 - TSS region transcription start site region 141841
4930478L05Rik 16 78560316 to 78564869 4553 + antisense lncRNA gene RIKEN cDNA 4930478L05 gene
Cpgi8378 16 78575892 to 78577061 1169 CpG island CpG island 8378
Tssr141842 16 78576347 to 78576397 50 - TSS region transcription start site region 141842
Tssr141843 16 78576595 to 78576618 23 - TSS region transcription start site region 141843
Tssr141844 16 78576622 to 78576645 23 - TSS region transcription start site region 141844
Tssr141845 16 78576649 to 78576666 17 - TSS region transcription start site region 141845
Tssr141846 16 78576682 to 78576696 14 - TSS region transcription start site region 141846
Tssr141847 16 78576799 to 78576806 7 - TSS region transcription start site region 141847
Tssr141848 16 78577023 to 78577035 12 - TSS region transcription start site region 141848
Tssr141849 16 78577178 to 78577193 15 - TSS region transcription start site region 141849
Tssr141850 16 78577203 to 78577219 16 - TSS region transcription start site region 141850
Gm24861 16 78624747 to 78624853 106 + snRNA gene predicted gene, 24861
Tssr139126 16 78694985 to 78694991 6 + TSS region transcription start site region 139126
Tssr139127 16 78695006 to 78695017 11 + TSS region transcription start site region 139127
Tssr139128 16 78695022 to 78695036 14 + TSS region transcription start site region 139128
4930570E03Rik 16 78695034 to 78709083 14049 + lincRNA gene RIKEN cDNA 4930570E03 gene
D16Ium49 16 78696272 to 78696518 246 DNA segment DNA segment, Chr 16, Indiana University Medical 49
Tssr139129 16 78707271 to 78707274 3 + TSS region transcription start site region 139129
4930403O18Rik 16 78757733 to 78758984 1251 + unclassified gene RIKEN cDNA 4930403O18 gene
D16Mit19 16 78811756 to 78811876 120 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 19
Sluc27 16 78811756 to 78811876 120 QTL susceptibility to lung cancer 27
Cpgi8379 16 78930929 to 78931491 562 CpG island CpG island 8379
Tssr139130 16 78930940 to 78930958 18 + TSS region transcription start site region 139130
Chodl 16 78930948 to 78951733 20785 + protein coding gene chondrolectin
D16Mit50 16 78952826 to 78952955 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 50
Tmprss15 16 78953008 to 79091097 138089 - protein coding gene transmembrane protease, serine 15
Gm15692 16 78964096 to 78964441 345 + pseudogene predicted gene 15692
Tssr141851 16 79091065 to 79091074 9 - TSS region transcription start site region 141851
Tssr141852 16 79091078 to 79091107 29 - TSS region transcription start site region 141852