MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 16:5797593-6007595

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17 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
D16Mit130	16	5800196 to 5800337	141		DNA segment	DNA segment, Chr 16, Massachusetts Institute of Technology 130
Tssr136918	16	5855728 to 5855743	15	+	TSS region	transcription start site region 136918
Tssr136919	16	5855767 to 5855779	12	+	TSS region	transcription start site region 136919
Cpgi7934	16	5884702 to 5885890	1188		CpG island	CpG island 7934
Tssr136920	16	5884921 to 5884962	41	+	TSS region	transcription start site region 136920
Tssr136921	16	5884969 to 5885048	79	+	TSS region	transcription start site region 136921
Tssr136922	16	5885270 to 5885311	41	+	TSS region	transcription start site region 136922
Rbfox1	16	5885355 to 7411526	1526171	+	protein coding gene	RNA binding protein, fox-1 homolog (C. elegans) 1
Tssr136923	16	5885453 to 5885509	56	+	TSS region	transcription start site region 136923
Tssr136924	16	5885579 to 5885592	13	+	TSS region	transcription start site region 136924
Tssr136925	16	5902157 to 5902201	44	+	TSS region	transcription start site region 136925
Tssr136926	16	5902593 to 5902595	2	+	TSS region	transcription start site region 136926
Gm36902	16	5946938 to 5950798	3860	-	lncRNA gene	predicted gene, 36902
Tssr139848	16	5949934 to 5949945	11	-	TSS region	transcription start site region 139848
Tssr139849	16	5949955 to 5949969	14	-	TSS region	transcription start site region 139849
1700123O21Rik	16	5975587 to 5998496	22909	+	sense intronic lncRNA gene	RIKEN cDNA 1700123O21 gene
D16Mit121	16	6001020 to 6001368	348		DNA segment	DNA segment, Chr 16, Massachusetts Institute of Technology 121