Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:4434043-5004054

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7910 16 4474923 to 4475464 541 CpG island CpG island 7910
Tssr139768 16 4475125 to 4475159 34 - TSS region transcription start site region 139768
Tssr139769 16 4475161 to 4475222 61 - TSS region transcription start site region 139769
Srl 16 4480216 to 4541816 61600 - protein coding gene sarcalumenin
Tssr139770 16 4509591 to 4509596 5 - TSS region transcription start site region 139770
Tssr139771 16 4523056 to 4523075 19 - TSS region transcription start site region 139771
Tssr139772 16 4523559 to 4523573 14 - TSS region transcription start site region 139772
Gm15885 16 4539308 to 4539695 387 + pseudogene predicted gene 15885
Cpgi7911 16 4541609 to 4542166 557 CpG island CpG island 7911
Tssr139773 16 4541764 to 4541779 15 - TSS region transcription start site region 139773
Tssr139774 16 4541794 to 4541839 45 - TSS region transcription start site region 139774
Tfap4 16 4544661 to 4559854 15193 - protein coding gene transcription factor AP4
Tssr139775 16 4549406 to 4549436 30 - TSS region transcription start site region 139775
Cpgi7912 16 4558049 to 4561009 2960 CpG island CpG island 7912
Tssr136855 16 4558107 to 4558142 35 + TSS region transcription start site region 136855
Tssr139776 16 4558607 to 4558649 42 - TSS region transcription start site region 139776
Tssr136856 16 4558697 to 4558741 44 + TSS region transcription start site region 136856
Tssr136857 16 4558749 to 4558763 14 + TSS region transcription start site region 136857
Tssr139777 16 4559608 to 4559681 73 - TSS region transcription start site region 139777
Tssr139778 16 4559721 to 4559747 26 - TSS region transcription start site region 139778
Tssr139779 16 4559777 to 4559825 48 - TSS region transcription start site region 139779
Tssr139780 16 4560087 to 4560101 14 - TSS region transcription start site region 139780
Cpgi7913 16 4586498 to 4587098 600 CpG island CpG island 7913
D330022H12Rik 16 4592252 to 4594481 2229 - lncRNA gene RIKEN cDNA D330022H12 gene
Cpgi7914 16 4593804 to 4595667 1863 CpG island CpG island 7914
Tssr136858 16 4594683 to 4594735 52 + TSS region transcription start site region 136858
Glis2 16 4594713 to 4624924 30211 + protein coding gene GLIS family zinc finger 2
Tssr136859 16 4594740 to 4594759 19 + TSS region transcription start site region 136859
Tssr136860 16 4594853 to 4594884 31 + TSS region transcription start site region 136860
Pam16 16 4616464 to 4624988 8524 - protein coding gene presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
Cpgi7915 16 4624297 to 4625115 818 CpG island CpG island 7915
Tssr139781 16 4624938 to 4624972 34 - TSS region transcription start site region 139781
Tssr139782 16 4624984 to 4624991 7 - TSS region transcription start site region 139782
Coro7 16 4626884 to 4679720 52836 - protein coding gene coronin 7
D16Mit180 16 4631112 to 4631218 106 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 180
Tssr139783 16 4634376 to 4634426 50 - TSS region transcription start site region 139783
Tssr139784 16 4635413 to 4635453 40 - TSS region transcription start site region 139784
Tssr136861 16 4639937 to 4639944 7 + TSS region transcription start site region 136861
Vasn 16 4639941 to 4650802 10861 + protein coding gene vasorin
Tssr136862 16 4639956 to 4639978 22 + TSS region transcription start site region 136862
Cpgi7916 16 4640032 to 4640442 410 CpG island CpG island 7916
Tssr136863 16 4649166 to 4649180 14 + TSS region transcription start site region 136863
Tssr139785 16 4670531 to 4670581 50 - TSS region transcription start site region 139785
Cpgi7917 16 4679146 to 4679957 811 CpG island CpG island 7917
Tssr139786 16 4679660 to 4679699 39 - TSS region transcription start site region 139786
Tssr139787 16 4679703 to 4679747 44 - TSS region transcription start site region 139787
Tssr136864 16 4679826 to 4679834 8 + TSS region transcription start site region 136864
Cpgi7918 16 4683689 to 4684603 914 CpG island CpG island 7918
Dnaja3 16 4684070 to 4707695 23625 + protein coding gene DnaJ heat shock protein family (Hsp40) member A3
Tssr136865 16 4684099 to 4684137 38 + TSS region transcription start site region 136865
Tssr136866 16 4684229 to 4684236 7 + TSS region transcription start site region 136866
Tssr136867 16 4701182 to 4701195 13 + TSS region transcription start site region 136867
Tssr136868 16 4707125 to 4707130 5 + TSS region transcription start site region 136868
Nmral1 16 4711317 to 4719356 8039 - protein coding gene NmrA-like family domain containing 1
Tssr139788 16 4719043 to 4719054 11 - TSS region transcription start site region 139788
Tssr139789 16 4719078 to 4719126 48 - TSS region transcription start site region 139789
Tssr139790 16 4719128 to 4719146 18 - TSS region transcription start site region 139790
Tssr139791 16 4719148 to 4719164 16 - TSS region transcription start site region 139791
Cpgi7919 16 4726099 to 4727282 1183 CpG island CpG island 7919
Tssr136869 16 4726284 to 4726290 6 + TSS region transcription start site region 136869
Tssr136870 16 4726357 to 4726370 13 + TSS region transcription start site region 136870
Hmox2 16 4726361 to 4766741 40380 + protein coding gene heme oxygenase 2
Tssr136871 16 4726374 to 4726439 65 + TSS region transcription start site region 136871
Gm15859 16 4729869 to 4730809 940 + antisense lncRNA gene predicted gene 15859
Tssr136872 16 4731215 to 4731217 2 + TSS region transcription start site region 136872
Tssr136873 16 4734972 to 4734976 4 + TSS region transcription start site region 136873
Tssr136874 16 4738722 to 4738723 1 + TSS region transcription start site region 136874
Tssr136875 16 4741543 to 4741592 49 + TSS region transcription start site region 136875
Tssr136876 16 4741594 to 4741630 36 + TSS region transcription start site region 136876
Tssr136877 16 4756879 to 4756881 2 + TSS region transcription start site region 136877
Cpgi7920 16 4756915 to 4757115 200 CpG island CpG island 7920
Tssr136878 16 4762616 to 4762631 15 + TSS region transcription start site region 136878
Cdip1 16 4765461 to 4790287 24826 - protein coding gene cell death inducing Trp53 target 1
Tssr139792 16 4769673 to 4769691 18 - TSS region transcription start site region 139792
Tssr139793 16 4769723 to 4769742 19 - TSS region transcription start site region 139793
Gm15835 16 4777743 to 4779454 1711 + lincRNA gene predicted gene 15835
Cpgi7921 16 4789315 to 4790510 1195 CpG island CpG island 7921
Tssr139794 16 4789865 to 4789885 20 - TSS region transcription start site region 139794
Tssr139795 16 4789887 to 4789949 62 - TSS region transcription start site region 139795
Tssr139796 16 4789984 to 4789995 11 - TSS region transcription start site region 139796
Tssr139797 16 4790000 to 4790009 9 - TSS region transcription start site region 139797
Tssr139798 16 4790187 to 4790203 16 - TSS region transcription start site region 139798
Tssr139799 16 4790205 to 4790216 11 - TSS region transcription start site region 139799
Tssr139800 16 4790220 to 4790300 80 - TSS region transcription start site region 139800
Tssr139801 16 4829283 to 4829319 36 - TSS region transcription start site region 139801
Tssr136879 16 4835406 to 4835422 16 + TSS region transcription start site region 136879
4930562C15Rik 16 4835416 to 4867686 32270 + protein coding gene RIKEN cDNA 4930562C15 gene
Tssr136880 16 4835432 to 4835457 25 + TSS region transcription start site region 136880
Gm10914 16 4869216 to 4870624 1408 - unclassified gene predicted gene 10914
Tssr139802 16 4870690 to 4870697 7 - TSS region transcription start site region 139802
Ubald1 16 4874779 to 4879851 5072 - protein coding gene UBA-like domain containing 1
Tssr139803 16 4875735 to 4875753 18 - TSS region transcription start site region 139803
Tssr139804 16 4875828 to 4875846 18 - TSS region transcription start site region 139804
Tssr139805 16 4878310 to 4878313 3 - TSS region transcription start site region 139805
Tssr139806 16 4878334 to 4878352 18 - TSS region transcription start site region 139806
Cpgi7922 16 4879006 to 4881106 2100 CpG island CpG island 7922
Tssr139807 16 4879042 to 4879053 11 - TSS region transcription start site region 139807
Tssr139808 16 4879789 to 4879803 14 - TSS region transcription start site region 139808
Tssr139809 16 4879810 to 4879836 26 - TSS region transcription start site region 139809
Tssr139810 16 4879849 to 4879864 15 - TSS region transcription start site region 139810
Tssr139811 16 4879872 to 4879892 20 - TSS region transcription start site region 139811
Tssr139812 16 4880160 to 4880178 18 - TSS region transcription start site region 139812
Tssr139813 16 4880264 to 4880275 11 - TSS region transcription start site region 139813
Tssr139814 16 4880284 to 4880302 18 - TSS region transcription start site region 139814
Tssr139815 16 4880447 to 4880479 32 - TSS region transcription start site region 139815
Tssr136881 16 4880674 to 4880710 36 + TSS region transcription start site region 136881
Cpgi7923 16 4885869 to 4886943 1074 CpG island CpG island 7923
Tssr136882 16 4886135 to 4886150 15 + TSS region transcription start site region 136882
Tssr136883 16 4886200 to 4886205 5 + TSS region transcription start site region 136883
Tssr136884 16 4886208 to 4886219 11 + TSS region transcription start site region 136884
Tssr136885 16 4886239 to 4886268 29 + TSS region transcription start site region 136885
Mgrn1 16 4886249 to 4938296 52047 + protein coding gene mahogunin, ring finger 1
Tssr136886 16 4886271 to 4886284 13 + TSS region transcription start site region 136886
Tssr136887 16 4886302 to 4886320 18 + TSS region transcription start site region 136887
Tssr136888 16 4908709 to 4908712 3 + TSS region transcription start site region 136888
Tssr136889 16 4913182 to 4913215 33 + TSS region transcription start site region 136889
Tssr136890 16 4927731 to 4927756 25 + TSS region transcription start site region 136890
Gm16861 16 4935164 to 4939585 4421 - antisense lncRNA gene predicted gene, 16861
Cpgi7924 16 4938967 to 4939696 729 CpG island CpG island 7924
Tssr136891 16 4939099 to 4939142 43 + TSS region transcription start site region 136891
Nudt16l1 16 4939111 to 4941028 1917 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
Tssr139816 16 4939579 to 4939603 24 - TSS region transcription start site region 139816
Tssr139817 16 4939607 to 4939624 17 - TSS region transcription start site region 139817
Anks3 16 4941436 to 4964205 22769 - protein coding gene ankyrin repeat and sterile alpha motif domain containing 3
Gm36681 16 4951196 to 4955444 4248 + lncRNA gene predicted gene, 36681
Cpgi7925 16 4963829 to 4964845 1016 CpG island CpG island 7925
Tssr4780 16 4964012 to 4964017 5 - TSS region transcription start site region 4780
Tssr139818 16 4964168 to 4964220 52 - TSS region transcription start site region 139818
Tssr136892 16 4964250 to 4964272 22 + TSS region transcription start site region 136892
4930451G09Rik 16 4964289 to 4978962 14673 + protein coding gene RIKEN cDNA 4930451G09 gene
Tssr136893 16 4964564 to 4964605 41 + TSS region transcription start site region 136893
Sept12 16 4986858 to 4997852 10994 - protein coding gene septin 12
Tssr136894 16 4987449 to 4987465 16 + TSS region transcription start site region 136894
Tssr139819 16 4997782 to 4997831 49 - TSS region transcription start site region 139819