Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:37512368-37882369

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf2e1 16 37509795 to 37539773 29978 - protein coding gene general transcription factor II E, polypeptide 1 (alpha subunit)
Cpgi8247 16 37539305 to 37540182 877 CpG island CpG island 8247
Tssr141040 16 37539693 to 37539710 17 - TSS region transcription start site region 141040
Tssr141041 16 37539727 to 37539730 3 - TSS region transcription start site region 141041
Tssr141042 16 37539737 to 37539751 14 - TSS region transcription start site region 141042
Tssr141043 16 37539752 to 37539780 28 - TSS region transcription start site region 141043
Tssr141044 16 37539781 to 37539796 15 - TSS region transcription start site region 141044
Tssr138308 16 37539883 to 37539918 35 + TSS region transcription start site region 138308
Rabl3 16 37539885 to 37572385 32500 + protein coding gene RAB, member RAS oncogene family-like 3
Gm49569 16 37549169 to 37549449 280 + unclassified gene predicted gene, 49569
Tssr138309 16 37580137 to 37580151 14 + TSS region transcription start site region 138309
Hgd 16 37580153 to 37632020 51867 + protein coding gene homogentisate 1, 2-dioxygenase
Tssr138310 16 37580212 to 37580224 12 + TSS region transcription start site region 138310
Tssr138311 16 37580228 to 37580258 30 + TSS region transcription start site region 138311
Tssr138312 16 37580274 to 37580289 15 + TSS region transcription start site region 138312
Gm46559 16 37591927 to 37596190 4263 - antisense lncRNA gene predicted gene, 46559
Tssr138313 16 37592081 to 37592085 4 + TSS region transcription start site region 138313
Tssr138314 16 37616790 to 37616801 11 + TSS region transcription start site region 138314
Tssr141045 16 37621909 to 37621936 27 - TSS region transcription start site region 141045
Tssr141046 16 37621938 to 37621947 9 - TSS region transcription start site region 141046
Tssr138315 16 37624345 to 37624351 6 + TSS region transcription start site region 138315
Ndufb4 16 37647602 to 37654368 6766 - protein coding gene NADH:ubiquinone oxidoreductase subunit B4
Cpgi8248 16 37653854 to 37654691 837 CpG island CpG island 8248
Tssr141047 16 37654393 to 37654406 13 - TSS region transcription start site region 141047
Tssr141048 16 37654408 to 37654450 42 - TSS region transcription start site region 141048
Gm35833 16 37680756 to 37685298 4542 + lncRNA gene predicted gene, 35833
Gm4600 16 37696770 to 37697340 570 - pseudogene predicted gene 4600
Tssr141049 16 37697368 to 37697369 1 - TSS region transcription start site region 141049
Gm46547 16 37714971 to 37715493 522 - lncRNA gene predicted gene, 46547
Cpgi8249 16 37776638 to 37777494 856 CpG island CpG island 8249
Tssr138316 16 37777045 to 37777065 20 + TSS region transcription start site region 138316
Fstl1 16 37777055 to 37836516 59461 + protein coding gene follistatin-like 1
Tssr138317 16 37777068 to 37777079 11 + TSS region transcription start site region 138317
Tssr138318 16 37777092 to 37777106 14 + TSS region transcription start site region 138318
Gm41452 16 37824341 to 37849601 25260 - lncRNA gene predicted gene, 41452
Tssr138319 16 37829124 to 37829136 12 + TSS region transcription start site region 138319
Tssr138320 16 37831567 to 37831582 15 + TSS region transcription start site region 138320
Tssr141050 16 37833912 to 37833945 33 - TSS region transcription start site region 141050
Tssr138321 16 37834471 to 37834521 50 + TSS region transcription start site region 138321
Tssr138322 16 37834554 to 37834571 17 + TSS region transcription start site region 138322
Tssr138323 16 37834596 to 37834607 11 + TSS region transcription start site region 138323
Tssr138324 16 37835447 to 37835460 13 + TSS region transcription start site region 138324
Tssr141051 16 37835741 to 37835746 5 - TSS region transcription start site region 141051
Tssr141052 16 37835797 to 37835821 24 - TSS region transcription start site region 141052
Tssr4870 16 37836463 to 37836473 10 + TSS region transcription start site region 4870
Tssr141053 16 37843529 to 37843550 21 - TSS region transcription start site region 141053
Gm36028 16 37850913 to 37861146 10233 - protein coding gene predicted gene, 36028
n-R5s34 16 37854782 to 37854897 115 + rRNA gene nuclear encoded rRNA 5S 34
Tssr141054 16 37856426 to 37856429 3 - TSS region transcription start site region 141054
Tssr141055 16 37861175 to 37861191 16 - TSS region transcription start site region 141055
Cpgi8250 16 37867759 to 37869488 1729 CpG island CpG island 8250
Tssr138325 16 37868119 to 37868170 51 + TSS region transcription start site region 138325
Tssr138326 16 37868184 to 37868203 19 + TSS region transcription start site region 138326
Tssr138327 16 37868337 to 37868375 38 + TSS region transcription start site region 138327
Tssr138328 16 37868383 to 37868481 98 + TSS region transcription start site region 138328
Lrrc58 16 37868400 to 37888857 20457 + protein coding gene leucine rich repeat containing 58
Tssr138329 16 37868488 to 37868497 9 + TSS region transcription start site region 138329
Tssr138330 16 37868565 to 37868733 168 + TSS region transcription start site region 138330
Tssr138331 16 37868735 to 37868763 28 + TSS region transcription start site region 138331
Tssr138332 16 37868819 to 37868845 26 + TSS region transcription start site region 138332
Tssr138333 16 37878363 to 37878375 12 + TSS region transcription start site region 138333
Tssr138334 16 37881301 to 37881326 25 + TSS region transcription start site region 138334
Tssr138335 16 37881345 to 37881361 16 + TSS region transcription start site region 138335