Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35885604-36585697

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41467 16 35891417 to 35893173 1756 + pseudogene predicted gene, 41467
Tssr138229 16 35919396 to 35919409 13 + TSS region transcription start site region 138229
Gm10237 16 35920464 to 35920799 335 + pseudogene predicted gene 10237
Tssr138230 16 35923768 to 35923773 5 + TSS region transcription start site region 138230
Dtx3l 16 35926515 to 35939027 12512 - protein coding gene deltex 3-like, E3 ubiquitin ligase
Tssr140960 16 35926951 to 35926955 4 - TSS region transcription start site region 140960
Tssr138231 16 35928669 to 35928699 30 + TSS region transcription start site region 138231
Tssr140961 16 35928844 to 35928865 21 - TSS region transcription start site region 140961
Tssr140962 16 35928883 to 35928903 20 - TSS region transcription start site region 140962
Tssr140963 16 35931021 to 35931036 15 - TSS region transcription start site region 140963
Tssr140964 16 35932528 to 35932548 20 - TSS region transcription start site region 140964
Tssr140965 16 35932729 to 35932740 11 - TSS region transcription start site region 140965
Tssr140966 16 35932767 to 35932778 11 - TSS region transcription start site region 140966
Cpgi8231 16 35938387 to 35939222 835 CpG island CpG island 8231
Parp9 16 35938470 to 35972605 34135 + protein coding gene poly (ADP-ribose) polymerase family, member 9
Tssr138232 16 35938470 to 35938489 19 + TSS region transcription start site region 138232
Tssr138233 16 35938512 to 35938526 14 + TSS region transcription start site region 138233
Tssr140967 16 35938885 to 35938908 23 - TSS region transcription start site region 140967
Tssr140968 16 35938912 to 35938938 26 - TSS region transcription start site region 140968
Tssr140969 16 35938941 to 35938979 38 - TSS region transcription start site region 140969
Tssr138234 16 35938972 to 35939072 100 + TSS region transcription start site region 138234
Tssr140970 16 35939052 to 35939074 22 - TSS region transcription start site region 140970
Tssr140971 16 35939082 to 35939109 27 - TSS region transcription start site region 140971
Tssr140972 16 35939708 to 35939731 23 - TSS region transcription start site region 140972
Tssr140973 16 35939737 to 35939762 25 - TSS region transcription start site region 140973
Tssr138235 16 35939861 to 35939872 11 + TSS region transcription start site region 138235
Tssr138236 16 35948306 to 35948320 14 + TSS region transcription start site region 138236
Tssr138237 16 35957023 to 35957063 40 + TSS region transcription start site region 138237
Gm15564 16 35966752 to 35983230 16478 - antisense lncRNA gene predicted gene 15564
Tssr138238 16 35972185 to 35972219 34 + TSS region transcription start site region 138238
Tssr140974 16 35981353 to 35981372 19 - TSS region transcription start site region 140974
Tssr138239 16 35981593 to 35981631 38 + TSS region transcription start site region 138239
Cpgi8232 16 35981606 to 35981761 155 CpG island CpG island 8232
Tssr140975 16 35981738 to 35981769 31 - TSS region transcription start site region 140975
Cpgi8233 16 35982846 to 35984201 1355 CpG island CpG island 8233
Tssr138240 16 35983089 to 35983106 17 + TSS region transcription start site region 138240
Tssr140976 16 35983234 to 35983269 35 - TSS region transcription start site region 140976
Tssr138241 16 35983307 to 35983395 88 + TSS region transcription start site region 138241
Kpna1 16 35983363 to 36037136 53773 + protein coding gene karyopherin (importin) alpha 1
Tssr138242 16 35983424 to 35983435 11 + TSS region transcription start site region 138242
Tssr140977 16 35983910 to 35983920 10 - TSS region transcription start site region 140977
Tssr138243 16 36026826 to 36026867 41 + TSS region transcription start site region 138243
Tssr138244 16 36034937 to 36034959 22 + TSS region transcription start site region 138244
Tssr138245 16 36035364 to 36035373 9 + TSS region transcription start site region 138245
Cpgi8234 16 36040972 to 36041672 700 CpG island CpG island 8234
Tssr138246 16 36041184 to 36041197 13 + TSS region transcription start site region 138246
Wdr5b 16 36041190 to 36042974 1784 + protein coding gene WD repeat domain 5B
Tssr138247 16 36041198 to 36041234 36 + TSS region transcription start site region 138247
Tssr138248 16 36041266 to 36041300 34 + TSS region transcription start site region 138248
Fam162a 16 36043844 to 36071515 27671 - protein coding gene family with sequence similarity 162, member A
Del(16Fam162a-Stfa2l1)1Gusa 16 36043844 to 36161948 118104 chromosomal deletion deletion, Chr 16, Guy Sauvageau 1
Tssr4864 16 36048102 to 36048106 4 - TSS region transcription start site region 4864
Cpgi8235 16 36071133 to 36072434 1301 CpG island CpG island 8235
Tssr140978 16 36071522 to 36071604 82 - TSS region transcription start site region 140978
Tssr138249 16 36071624 to 36071688 64 + TSS region transcription start site region 138249
Ccdc58 16 36071685 to 36092120 20435 + protein coding gene coiled-coil domain containing 58
Tssr140979 16 36071734 to 36071759 25 - TSS region transcription start site region 140979
Tssr138250 16 36072068 to 36072090 22 + TSS region transcription start site region 138250
Tssr140980 16 36072231 to 36072234 3 - TSS region transcription start site region 140980
Tssr4865 16 36098032 to 36098037 5 - TSS region transcription start site region 4865
Gm41450 16 36102717 to 36111131 8414 + lncRNA gene predicted gene, 41450
Tssr138251 16 36103703 to 36103710 7 + TSS region transcription start site region 138251
Csta1 16 36119946 to 36131189 11243 - protein coding gene cystatin A1
Tssr140981 16 36131089 to 36131102 13 - TSS region transcription start site region 140981
Tssr140982 16 36131156 to 36131191 35 - TSS region transcription start site region 140982
Gm10092 16 36135939 to 36137731 1792 + pseudogene predicted gene 10092
Gm23080 16 36137872 to 36137974 102 - snRNA gene predicted gene, 23080
Tssr138252 16 36156801 to 36156813 12 + TSS region transcription start site region 138252
Stfa2l1 16 36156811 to 36161948 5137 + protein coding gene stefin A2 like 1
Tssr138253 16 36160046 to 36160052 6 + TSS region transcription start site region 138253
Tssr138254 16 36160943 to 36160945 2 + TSS region transcription start site region 138254
Gm22885 16 36162015 to 36162121 106 - snRNA gene predicted gene, 22885
Tssr138255 16 36184082 to 36184095 13 + TSS region transcription start site region 138255
Cstdc4 16 36184212 to 36188111 3899 + protein coding gene cystatin domain containing 4
Gm25024 16 36188174 to 36188277 103 - snRNA gene predicted gene, 25024
Gm6815 16 36194849 to 36198129 3280 - pseudogene predicted gene 6815
Tssr138256 16 36206395 to 36206398 3 + TSS region transcription start site region 138256
Gm10913 16 36209277 to 36209739 462 + pseudogene predicted pseudogene 10913
Csta3 16 36210403 to 36217788 7385 + protein coding gene cystatin A family member 3
Gm24801 16 36217922 to 36218026 104 - snRNA gene predicted gene, 24801
Csta2 16 36221562 to 36257450 35888 + protein coding gene cystatin A family member 2
Gm10813 16 36235604 to 36235697 93 - pseudogene predicted gene 10813
D16Mit4 16 36240487 to 36240618 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 4
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
Tssr138257 16 36252872 to 36252877 5 + TSS region transcription start site region 138257
Gm24569 16 36257510 to 36257613 103 - snRNA gene predicted gene, 24569
Tssr4866 16 36277071 to 36277073 2 + TSS region transcription start site region 4866
Tssr138258 16 36277145 to 36277182 37 + TSS region transcription start site region 138258
Stfa1 16 36277148 to 36285371 8223 + protein coding gene stefin A1
Gm23306 16 36285433 to 36285537 104 - snRNA gene predicted gene, 23306
Cstdc3 16 36305357 to 36312717 7360 + protein coding gene cystatin domain containing 3
Tssr138259 16 36307992 to 36308005 13 + TSS region transcription start site region 138259
Gm25254 16 36312793 to 36312896 103 - snRNA gene predicted gene, 25254
Gm49647 16 36319142 to 36319605 463 + pseudogene predicted gene, 49647
Gm24437 16 36321481 to 36321584 103 + snRNA gene predicted gene, 24437
Cstdc6 16 36321665 to 36334332 12667 - protein coding gene cystatin domain containing 6
Tssr140983 16 36334330 to 36334347 17 - TSS region transcription start site region 140983
Gm25465 16 36359218 to 36359322 104 + snRNA gene predicted gene, 25465
Cstdc5 16 36359382 to 36367570 8188 - protein coding gene cystatin domain containing 5
Tssr140984 16 36359497 to 36359510 13 - TSS region transcription start site region 140984
Gm15845 16 36367070 to 36387406 20336 + antisense lncRNA gene predicted gene 15845
Tssr140985 16 36367534 to 36367551 17 - TSS region transcription start site region 140985
Tssr140986 16 36367623 to 36367637 14 - TSS region transcription start site region 140986
Tssr4867 16 36367724 to 36367766 42 - TSS region transcription start site region 4867
Gm24218 16 36386190 to 36386294 104 + snRNA gene predicted gene, 24218
Gm7260 16 36387978 to 36391122 3144 - protein coding gene predicted gene 7260
Gm22349 16 36403779 to 36403885 106 + snRNA gene predicted gene, 22349
Stfa2 16 36403992 to 36408457 4465 - protein coding gene stefin A2
Tssr140987 16 36408349 to 36408362 13 - TSS region transcription start site region 140987
Tssr140988 16 36408437 to 36408463 26 - TSS region transcription start site region 140988
Gm22263 16 36419087 to 36419190 103 + snRNA gene predicted gene, 22263
Gm49652 16 36419250 to 36420921 1671 - pseudogene predicted gene, 49652
Gm25903 16 36438644 to 36438746 102 + snRNA gene predicted gene, 25903
Stfa3 16 36450537 to 36455392 4855 - protein coding gene stefin A3
Tssr140989 16 36450565 to 36450581 16 - TSS region transcription start site region 140989
Tssr140990 16 36455312 to 36455331 19 - TSS region transcription start site region 140990
Tssr140991 16 36455378 to 36455400 22 - TSS region transcription start site region 140991
Gm49653 16 36472616 to 36473841 1225 - unclassified gene predicted gene, 49653
Casr 16 36493696 to 36562141 68445 - protein coding gene calcium-sensing receptor
Cpgi8236 16 36494908 to 36495880 972 CpG island CpG island 8236
Cpgi8237 16 36509687 to 36509894 207 CpG island CpG island 8237
Gm25902 16 36512333 to 36512650 317 - unclassified non-coding RNA gene predicted gene, 25902
Tssr140992 16 36532169 to 36532184 15 - TSS region transcription start site region 140992
Tssr140993 16 36532186 to 36532213 27 - TSS region transcription start site region 140993
Tssr140994 16 36532218 to 36532235 17 - TSS region transcription start site region 140994
Tssr140995 16 36532239 to 36532261 22 - TSS region transcription start site region 140995
Cpgi8238 16 36561343 to 36562026 683 CpG island CpG island 8238
Tssr140996 16 36561541 to 36561554 13 - TSS region transcription start site region 140996
Tssr140997 16 36561601 to 36561614 13 - TSS region transcription start site region 140997
Tssr140998 16 36561749 to 36561763 14 - TSS region transcription start site region 140998
Tssr140999 16 36561786 to 36561799 13 - TSS region transcription start site region 140999
Gm49662 16 36569145 to 36598497 29352 - lincRNA gene predicted gene, 49662
Gm49664 16 36577566 to 36577715 149 - pseudogene predicted gene, 49664
Tssr4868 16 36580173 to 36580184 11 + TSS region transcription start site region 4868
Gm49663 16 36580461 to 36580714 253 + pseudogene predicted gene, 49663