Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:11468142-12500374

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Gm15897 16 11494821 to 11496306 1485 - pseudogene predicted gene 15897
Tssr137104 16 11500705 to 11500712 7 + TSS region transcription start site region 137104
5830487K18Rik 16 11549741 to 11551159 1418 unclassified gene RIKEN cDNA 5830487K18 gene
Gm32100 16 11583706 to 11588531 4825 + lncRNA gene predicted gene, 32100
Tssr137105 16 11584508 to 11584513 5 + TSS region transcription start site region 137105
Tssr137106 16 11615880 to 11615902 22 + TSS region transcription start site region 137106
D16Mit81 16 11616382 to 11616494 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 81
Dice1 16 11616382 to 11616494 112 QTL determination of interleukin 4 commitment 1
Tssr137107 16 11632081 to 11632085 4 + TSS region transcription start site region 137107
Tssr140027 16 11633171 to 11633177 6 - TSS region transcription start site region 140027
Tssr137108 16 11644708 to 11644749 41 + TSS region transcription start site region 137108
Tssr137109 16 11656117 to 11656137 20 + TSS region transcription start site region 137109
Tssr137110 16 11656144 to 11656155 11 + TSS region transcription start site region 137110
Gm4279 16 11688169 to 11691857 3688 - antisense lncRNA gene predicted gene 4279
Tssr137111 16 11778448 to 11778465 17 + TSS region transcription start site region 137111
4833415N18Rik 16 11779702 to 11781501 1799 + lincRNA gene RIKEN cDNA 4833415N18 gene
Cpped1 16 11803721 to 11909445 105724 - protein coding gene calcineurin-like phosphoesterase domain containing 1
Tssr140028 16 11804985 to 11804998 13 - TSS region transcription start site region 140028
Gm9961 16 11901364 to 11930594 29230 + lincRNA gene predicted gene 9961
Cpgi7965 16 11909004 to 11909468 464 CpG island CpG island 7965
Tssr140029 16 11909337 to 11909353 16 - TSS region transcription start site region 140029
Tssr140030 16 11909356 to 11909379 23 - TSS region transcription start site region 140030
Tssr140031 16 11909383 to 11909390 7 - TSS region transcription start site region 140031
Tssr140032 16 11909405 to 11909429 24 - TSS region transcription start site region 140032
Gm32278 16 11978665 to 11983997 5332 - lncRNA gene predicted gene, 32278
Cpgi7966 16 11983142 to 11985374 2232 CpG island CpG island 7966
Tssr137112 16 11984107 to 11984153 46 + TSS region transcription start site region 137112
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137113 16 11984156 to 11984170 14 + TSS region transcription start site region 137113
Tssr137114 16 11984361 to 11984382 21 + TSS region transcription start site region 137114
Tssr137115 16 11984389 to 11984422 33 + TSS region transcription start site region 137115
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116
Gm19571 16 12381130 to 12381502 372 - pseudogene predicted gene, 19571
C87114 16 12408283 to 12409177 894 - pseudogene expressed sequence C87114
Tssr137117 16 12450354 to 12450355 1 + TSS region transcription start site region 137117