Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:56188360-57218431

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31657 13 56166600 to 56193544 26944 + lncRNA gene predicted gene, 31657
Gm47104 13 56202231 to 56202937 706 - pseudogene predicted gene, 47104
Cpgi5697 13 56208952 to 56209156 204 CpG island CpG island 5697
Cpgi5698 13 56221160 to 56222712 1552 CpG island CpG island 5698
4930550C17Rik 13 56222224 to 56243940 21716 - lincRNA gene RIKEN cDNA 4930550C17 gene
Neurog1 13 56250492 to 56252163 1671 - protein coding gene neurogenin 1
Cpgi5699 13 56251165 to 56252776 1611 CpG island CpG island 5699
Tssr122772 13 56252175 to 56252181 6 - TSS region transcription start site region 122772
Cpgi5700 13 56258349 to 56259702 1353 CpG island CpG island 5700
Cxcl14 13 56288643 to 56296551 7908 - protein coding gene chemokine (C-X-C motif) ligand 14
Tssr120010 13 56288645 to 56288651 6 + TSS region transcription start site region 120010
Tssr122773 13 56288916 to 56288963 47 - TSS region transcription start site region 122773
Tssr122774 13 56289193 to 56289211 18 - TSS region transcription start site region 122774
Tssr122775 13 56289331 to 56289368 37 - TSS region transcription start site region 122775
Cpgi5701 13 56295665 to 56296953 1288 CpG island CpG island 5701
Tssr122776 13 56295894 to 56295907 13 - TSS region transcription start site region 122776
Tssr122777 13 56296327 to 56296347 20 - TSS region transcription start site region 122777
Tssr122778 13 56296350 to 56296367 17 - TSS region transcription start site region 122778
Tssr122779 13 56296373 to 56296399 26 - TSS region transcription start site region 122779
Gm17878 13 56318325 to 56320334 2009 - pseudogene predicted gene, 17878
Sgp3 13 56322643 to 76823195 20500552 QTL serum gp70 production 3
D13Mit250 13 56322643 to 56322770 127 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 250
4933404M09Rik 13 56337705 to 56339975 2270 unclassified gene RIKEN cDNA 4933404M09 gene
Gm24716 13 56342425 to 56342528 103 - snRNA gene predicted gene, 24716
Gm32003 13 56345760 to 56348847 3087 + lncRNA gene predicted gene, 32003
Gm40960 13 56346559 to 56357181 10622 - lncRNA gene predicted gene, 40960
D13Mit184 13 56347540 to 56347710 170 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 184
Tssr122780 13 56357189 to 56357205 16 - TSS region transcription start site region 122780
Gm10782 13 56362900 to 56368857 5957 + lincRNA gene predicted gene 10782
Tssr120011 13 56372631 to 56372636 5 + TSS region transcription start site region 120011
Gm46418 13 56382708 to 56423812 41104 + lncRNA gene predicted gene, 46418
Tssr122781 13 56426501 to 56426508 7 - TSS region transcription start site region 122781
Tssr120012 13 56426582 to 56426593 11 + TSS region transcription start site region 120012
Gm3045 13 56426594 to 56433753 7159 + protein coding gene predicted gene 3045
Tssr120013 13 56426612 to 56426624 12 + TSS region transcription start site region 120013
Slc25a48 13 56437964 to 56472367 34403 + protein coding gene solute carrier family 25, member 48
Cpgi5702 13 56438269 to 56438779 510 CpG island CpG island 5702
Tssr120014 13 56438302 to 56438324 22 + TSS region transcription start site region 120014
Tssr120015 13 56438343 to 56438369 26 + TSS region transcription start site region 120015
Tssr120016 13 56438381 to 56438393 12 + TSS region transcription start site region 120016
Tssr120017 13 56438915 to 56438917 2 + TSS region transcription start site region 120017
Tssr120018 13 56441471 to 56441475 4 + TSS region transcription start site region 120018
Tssr122782 13 56472420 to 56472426 6 - TSS region transcription start site region 122782
Il9 13 56479277 to 56482246 2969 - protein coding gene interleukin 9
D13Mit13 13 56481436 to 56481584 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 13
Cpfd5 13 56481436 to 56481584 148 QTL cerebellum pattern fissures, declival 5
Cia28 13 56481436 to 96102654 39621218 QTL collagen induced arthritis QTL 28
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
Bwem2 13 56481436 to 56481584 148 QTL body weight day 30 males 2
Bmd13 13 56481436 to 56481584 148 QTL bone mineral density 13
Tssr122783 13 56482153 to 56482197 44 - TSS region transcription start site region 122783
Tssr122784 13 56482255 to 56482258 3 - TSS region transcription start site region 122784
Tssr122785 13 56488101 to 56488131 30 - TSS region transcription start site region 122785
Tssr120019 13 56502088 to 56502101 13 + TSS region transcription start site region 120019
Tssr122786 13 56503793 to 56503796 3 - TSS region transcription start site region 122786
Tssr120020 13 56505888 to 56505919 31 + TSS region transcription start site region 120020
Cpgi5703 13 56522141 to 56522843 702 CpG island CpG island 5703
Tssr120021 13 56522449 to 56522495 46 + TSS region transcription start site region 120021
Fbxl21 13 56522472 to 56537898 15426 + protein coding gene F-box and leucine-rich repeat protein 21
Tssr120022 13 56522497 to 56522516 19 + TSS region transcription start site region 120022
Tssr120023 13 56522520 to 56522540 20 + TSS region transcription start site region 120023
Gm38602 13 56526112 to 56527002 890 - lncRNA gene predicted gene, 38602
Lect2 13 56542464 to 56548502 6038 - protein coding gene leukocyte cell-derived chemotaxin 2
D13Bc1 13 56544585 to 56544686 101 DNA segment DNA segment, Chr 13, University of British Columbia 1
Tssr122787 13 56548418 to 56548468 50 - TSS region transcription start site region 122787
Tssr122788 13 56548474 to 56548487 13 - TSS region transcription start site region 122788
Tssr122789 13 56548502 to 56548518 16 - TSS region transcription start site region 122789
Tssr122790 13 56548534 to 56548547 13 - TSS region transcription start site region 122790
Gm32759 13 56585690 to 56591754 6064 + lncRNA gene predicted gene, 32759
2010203P06Rik 13 56595537 to 56596642 1105 + lincRNA gene RIKEN cDNA 2010203P06 gene
Tssr120024 13 56596324 to 56596355 31 + TSS region transcription start site region 120024
Gm10781 13 56601418 to 56602562 1144 protein coding gene predicted gene 10781
Tssr120025 13 56609233 to 56609257 24 + TSS region transcription start site region 120025
Tssr120026 13 56609281 to 56609300 19 + TSS region transcription start site region 120026
Cpgi5704 13 56609288 to 56609938 650 CpG island CpG island 5704
Tssr120027 13 56609332 to 56609358 26 + TSS region transcription start site region 120027
Tssr120028 13 56609488 to 56609489 1 + TSS region transcription start site region 120028
Tssr120029 13 56609513 to 56609515 2 + TSS region transcription start site region 120029
Tssr120030 13 56609516 to 56609606 90 + TSS region transcription start site region 120030
Tgfbi 13 56609603 to 56639339 29736 + protein coding gene transforming growth factor, beta induced
Tssr120031 13 56609608 to 56609628 20 + TSS region transcription start site region 120031
Tssr120032 13 56609646 to 56609648 2 + TSS region transcription start site region 120032
Tssr120033 13 56613825 to 56613844 19 + TSS region transcription start site region 120033
Tssr120034 13 56614254 to 56614274 20 + TSS region transcription start site region 120034
D13Mit251 13 56614737 to 56614855 118 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 251
Tssr120035 13 56623548 to 56623580 32 + TSS region transcription start site region 120035
Tssr120036 13 56625224 to 56625260 36 + TSS region transcription start site region 120036
Tssr120037 13 56625642 to 56625666 24 + TSS region transcription start site region 120037
Tssr120038 13 56625722 to 56625763 41 + TSS region transcription start site region 120038
Tssr122791 13 56626166 to 56626181 15 - TSS region transcription start site region 122791
Tssr120039 13 56627931 to 56627967 36 + TSS region transcription start site region 120039
Tssr120040 13 56629722 to 56629735 13 + TSS region transcription start site region 120040
Tssr120041 13 56630564 to 56630591 27 + TSS region transcription start site region 120041
Tssr4084 13 56630878 to 56630898 20 + TSS region transcription start site region 4084
Tssr120042 13 56632911 to 56632926 15 + TSS region transcription start site region 120042
Tssr120043 13 56633248 to 56633256 8 + TSS region transcription start site region 120043
Tssr120044 13 56639666 to 56639680 14 + TSS region transcription start site region 120044
Gm40961 13 56663677 to 56665463 1786 - lncRNA gene predicted gene, 40961
Gm32965 13 56671045 to 56678624 7579 - lncRNA gene predicted gene, 32965
Gm32910 13 56678032 to 56679772 1740 + lncRNA gene predicted gene, 32910
Cpgi5705 13 56682382 to 56682835 453 CpG island CpG island 5705
Gm33019 13 56682604 to 56690296 7692 + lncRNA gene predicted gene, 33019
Gm27698 13 56699930 to 56700178 248 + unclassified non-coding RNA gene predicted gene, 27698
Tssr120045 13 56702426 to 56702435 9 + TSS region transcription start site region 120045
Cpgi5706 13 56702491 to 56704005 1514 CpG island CpG island 5706
Tssr120046 13 56702983 to 56703112 129 + TSS region transcription start site region 120046
Smad5 13 56703010 to 56742377 39367 + protein coding gene SMAD family member 5
Tssr120047 13 56703360 to 56703431 71 + TSS region transcription start site region 120047
Tssr120048 13 56703437 to 56703445 8 + TSS region transcription start site region 120048
Tssr120049 13 56703449 to 56703460 11 + TSS region transcription start site region 120049
Tssr120050 13 56703504 to 56703537 33 + TSS region transcription start site region 120050
Gm27301 13 56703641 to 56703767 126 + unclassified non-coding RNA gene predicted gene, 27301
Gm27834 13 56703881 to 56704005 124 + unclassified non-coding RNA gene predicted gene, 27834
Tssr122792 13 56703943 to 56703954 11 - TSS region transcription start site region 122792
Gm27271 13 56704030 to 56704199 169 + unclassified non-coding RNA gene predicted gene, 27271
Tssr120051 13 56706554 to 56706559 5 + TSS region transcription start site region 120051
Tssr120052 13 56728905 to 56728909 4 + TSS region transcription start site region 120052
D13Mit208 13 56732406 to 56732550 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 208
Tssr120053 13 56747784 to 56747801 17 + TSS region transcription start site region 120053
Tssr120054 13 56747967 to 56747979 12 + TSS region transcription start site region 120054
Gm45623 13 56752371 to 56753827 1456 - protein coding gene predicted gene 45623
Cpgi5707 13 56752399 to 56754152 1753 CpG island CpG island 5707
Tssr122793 13 56753814 to 56753854 40 - TSS region transcription start site region 122793
Trpc7 13 56773113 to 56895993 122880 - protein coding gene transient receptor potential cation channel, subfamily C, member 7
Cpgi5708 13 56806846 to 56807177 331 CpG island CpG island 5708
Cpgi5709 13 56810284 to 56810589 305 CpG island CpG island 5709
Tssr120055 13 56810420 to 56810459 39 + TSS region transcription start site region 120055
D13Mit185 13 56829432 to 56829580 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 185
Cpgi5710 13 56887285 to 56887935 650 CpG island CpG island 5710
Cpgi5711 13 56895429 to 56895697 268 CpG island CpG island 5711
Tssr122794 13 56895774 to 56895793 19 - TSS region transcription start site region 122794
Gm22777 13 56930820 to 56930948 128 - snoRNA gene predicted gene, 22777
Gm40962 13 56963730 to 56964660 930 + lncRNA gene predicted gene, 40962
Tssr120056 13 56963841 to 56963845 4 + TSS region transcription start site region 120056
Gm33140 13 56993712 to 57003774 10062 + lncRNA gene predicted gene, 33140
Sgp5 13 105285678 to 56322643 -48963035 QTL serum gp70 production 5