Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54693988-54873993

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5647 13 54693345 to 54694710 1365 CpG island CpG island 5647
Tssr119889 13 54701435 to 54701446 11 + TSS region transcription start site region 119889
Tssr119890 13 54701457 to 54701479 22 + TSS region transcription start site region 119890
Cdhr2 13 54701463 to 54736662 35199 + protein coding gene cadherin-related family member 2
Tssr119891 13 54717608 to 54717617 9 + TSS region transcription start site region 119891
Tssr119892 13 54718560 to 54718572 12 + TSS region transcription start site region 119892
Tssr119893 13 54720145 to 54720161 16 + TSS region transcription start site region 119893
Tssr119894 13 54726791 to 54726802 11 + TSS region transcription start site region 119894
Tssr119895 13 54730243 to 54730246 3 + TSS region transcription start site region 119895
Tssr119896 13 54731718 to 54731728 10 + TSS region transcription start site region 119896
Tssr119897 13 54731775 to 54731790 15 + TSS region transcription start site region 119897
Tssr4074 13 54731819 to 54731828 9 + TSS region transcription start site region 4074
Tssr119898 13 54732029 to 54732053 24 + TSS region transcription start site region 119898
Gprin1 13 54736671 to 54749874 13203 - protein coding gene G protein-regulated inducer of neurite outgrowth 1
Cpgi5648 13 54737122 to 54738998 1876 CpG island CpG island 5648
9530001D17Rik 13 54741951 to 54742331 380 unclassified gene RIKEN cDNA 9530001D17 gene
Cpgi5649 13 54748861 to 54750295 1434 CpG island CpG island 5649
Tssr122638 13 54749613 to 54749625 12 - TSS region transcription start site region 122638
Tssr122639 13 54749627 to 54749697 70 - TSS region transcription start site region 122639
Tssr122640 13 54749849 to 54749893 44 - TSS region transcription start site region 122640
Tssr122641 13 54749908 to 54749920 12 - TSS region transcription start site region 122641
Cpgi5650 13 54757950 to 54759033 1083 CpG island CpG island 5650
Sncb 13 54758860 to 54766595 7735 - protein coding gene synuclein, beta
Tssr122642 13 54759208 to 54759218 10 - TSS region transcription start site region 122642
Tssr122643 13 54759305 to 54759313 8 - TSS region transcription start site region 122643
Tssr122644 13 54759374 to 54759403 29 - TSS region transcription start site region 122644
Tssr122645 13 54759433 to 54759441 8 - TSS region transcription start site region 122645
Tssr122646 13 54759507 to 54759518 11 - TSS region transcription start site region 122646
Tssr122647 13 54759917 to 54759955 38 - TSS region transcription start site region 122647
Tssr122648 13 54762695 to 54762709 14 - TSS region transcription start site region 122648
Tssr122649 13 54762713 to 54762729 16 - TSS region transcription start site region 122649
Tssr122650 13 54762948 to 54762971 23 - TSS region transcription start site region 122650
Tssr122651 13 54765593 to 54765615 22 - TSS region transcription start site region 122651
Tssr122652 13 54765629 to 54765648 19 - TSS region transcription start site region 122652
Cpgi5651 13 54765636 to 54766710 1074 CpG island CpG island 5651
Tssr122653 13 54765704 to 54765720 16 - TSS region transcription start site region 122653
Tssr122654 13 54765848 to 54765907 59 - TSS region transcription start site region 122654
Tssr122655 13 54766500 to 54766503 3 - TSS region transcription start site region 122655
Tssr122656 13 54766553 to 54766572 19 - TSS region transcription start site region 122656
Gm16249 13 54777514 to 54783091 5577 - antisense lncRNA gene predicted gene 16249
Tssr119899 13 54783988 to 54783993 5 + TSS region transcription start site region 119899
Eif4e1b 13 54783998 to 54788459 4461 + protein coding gene eukaryotic translation initiation factor 4E family member 1B
Cpgi5652 13 54788997 to 54790131 1134 CpG island CpG island 5652
Tspan17 13 54789377 to 54796776 7399 + protein coding gene tetraspanin 17
Tssr119900 13 54789426 to 54789497 71 + TSS region transcription start site region 119900
Tssr119901 13 54789500 to 54789509 9 + TSS region transcription start site region 119901
Tssr119902 13 54789984 to 54789989 5 + TSS region transcription start site region 119902
Gm16250 13 54840649 to 54840904 255 - pseudogene predicted gene 16250
Gm40959 13 54858135 to 54874869 16734 - lncRNA gene predicted gene, 40959