Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53685650-54425680

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550
Drd1 13 54051183 to 54055658 4475 - protein coding gene dopamine receptor D1
Cpgi5629 13 54055010 to 54055905 895 CpG island CpG island 5629
Tssr122595 13 54055088 to 54055118 30 - TSS region transcription start site region 122595
Tssr122596 13 54055650 to 54055680 30 - TSS region transcription start site region 122596
Cpgi5630 13 54071655 to 54072713 1058 CpG island CpG island 5630
Tssr119836 13 54071815 to 54071859 44 + TSS region transcription start site region 119836
Tssr119837 13 54071860 to 54071909 49 + TSS region transcription start site region 119837
Sfxn1 13 54071869 to 54108342 36473 + protein coding gene sideroflexin 1
Tssr122597 13 54072591 to 54072599 8 - TSS region transcription start site region 122597
Tssr119838 13 54073729 to 54073740 11 + TSS region transcription start site region 119838
Tssr122598 13 54106745 to 54106767 22 - TSS region transcription start site region 122598
Tssr119839 13 54106802 to 54106822 20 + TSS region transcription start site region 119839
Tssr119840 13 54107203 to 54107205 2 + TSS region transcription start site region 119840
Gm18473 13 54140933 to 54141798 865 + pseudogene predicted gene, 18473
Gm34640 13 54177791 to 54181769 3978 - lncRNA gene predicted gene, 34640
Tssr122599 13 54189976 to 54190008 32 - TSS region transcription start site region 122599
Tssr122600 13 54190049 to 54190063 14 - TSS region transcription start site region 122600
Tssr122601 13 54190172 to 54190187 15 - TSS region transcription start site region 122601
Cpgi5631 13 54191961 to 54192508 547 CpG island CpG island 5631
Tssr119841 13 54192106 to 54192151 45 + TSS region transcription start site region 119841
Hrh2 13 54192129 to 54236180 44051 + protein coding gene histamine receptor H2
Tssr119842 13 54209630 to 54209650 20 + TSS region transcription start site region 119842
Gm16578 13 54219453 to 54223023 3570 - antisense lncRNA gene predicted gene 16578
Tssr122602 13 54219951 to 54219962 11 - TSS region transcription start site region 122602
Gm48615 13 54245296 to 54245584 288 + lincRNA gene predicted gene, 48615
Cpgi5632 13 54282664 to 54282959 295 CpG island CpG island 5632
Gm40955 13 54283242 to 54289078 5836 + lncRNA gene predicted gene, 40955
Gm48623 13 54301959 to 54312797 10838 + lincRNA gene predicted gene, 48623
Cpgi5633 13 54302431 to 54303615 1184 CpG island CpG island 5633
Tssr119843 13 54302514 to 54302671 157 + TSS region transcription start site region 119843
Tssr119844 13 54302784 to 54302800 16 + TSS region transcription start site region 119844
Tssr122603 13 54303491 to 54303517 26 - TSS region transcription start site region 122603
Tssr119845 13 54304815 to 54304829 14 + TSS region transcription start site region 119845
Gm48622 13 54309905 to 54327880 17975 - lincRNA gene predicted gene, 48622
D13Mit297 13 54326741 to 54326871 130 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-297
Tssr119846 13 54336029 to 54336033 4 + TSS region transcription start site region 119846
Tssr119847 13 54346641 to 54346645 4 + TSS region transcription start site region 119847
Tssr119848 13 54366436 to 54366437 1 + TSS region transcription start site region 119848
Tssr119849 13 54371340 to 54371352 12 + TSS region transcription start site region 119849
Cpgi5634 13 54371342 to 54372083 741 CpG island CpG island 5634
Cplx2 13 54371349 to 54383917 12568 + protein coding gene complexin 2
Tssr119850 13 54371356 to 54371387 31 + TSS region transcription start site region 119850
Tssr119851 13 54371423 to 54371428 5 + TSS region transcription start site region 119851
Tssr119852 13 54371441 to 54371466 25 + TSS region transcription start site region 119852
Tssr119853 13 54371467 to 54371498 31 + TSS region transcription start site region 119853
Tssr119854 13 54371500 to 54371516 16 + TSS region transcription start site region 119854
Tssr119855 13 54371527 to 54371532 5 + TSS region transcription start site region 119855
Cpgi5635 13 54372761 to 54373049 288 CpG island CpG island 5635
Tssr119856 13 54378579 to 54378590 11 + TSS region transcription start site region 119856
Cpgi5636 13 54378739 to 54379255 516 CpG island CpG island 5636
Tssr122604 13 54378913 to 54378941 28 - TSS region transcription start site region 122604
Tssr122605 13 54379539 to 54379578 39 - TSS region transcription start site region 122605
Tssr119857 13 54379758 to 54379776 18 + TSS region transcription start site region 119857
Tssr119858 13 54379818 to 54379829 11 + TSS region transcription start site region 119858
Tssr122606 13 54380218 to 54380227 9 - TSS region transcription start site region 122606
Tssr119859 13 54380286 to 54380303 17 + TSS region transcription start site region 119859
Tssr119860 13 54380594 to 54380610 16 + TSS region transcription start site region 119860
Tssr119861 13 54381774 to 54381786 12 + TSS region transcription start site region 119861
Tssr119862 13 54382084 to 54382095 11 + TSS region transcription start site region 119862
Tssr119863 13 54382535 to 54382552 17 + TSS region transcription start site region 119863
Tssr119864 13 54382568 to 54382583 15 + TSS region transcription start site region 119864
Tssr119865 13 54382642 to 54382653 11 + TSS region transcription start site region 119865
Tssr119866 13 54382667 to 54382686 19 + TSS region transcription start site region 119866
Tssr119867 13 54382733 to 54382752 19 + TSS region transcription start site region 119867
Tssr119868 13 54382763 to 54382783 20 + TSS region transcription start site region 119868
Tssr119869 13 54382793 to 54382866 73 + TSS region transcription start site region 119869
Gm16248 13 54399092 to 54399334 242 - lincRNA gene predicted gene 16248
Tssr122607 13 54399246 to 54399251 5 - TSS region transcription start site region 122607
Tssr122608 13 54412367 to 54412389 22 - TSS region transcription start site region 122608