Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53125003-53446707

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ror2 13 53109317 to 53286109 176792 - protein coding gene receptor tyrosine kinase-like orphan receptor 2
Tssr122574 13 53146642 to 53146644 2 - TSS region transcription start site region 122574
Tssr4073 13 53161156 to 53161158 2 + TSS region transcription start site region 4073
Tssr122575 13 53163476 to 53163480 4 - TSS region transcription start site region 122575
Cpgi5618 13 53169125 to 53169369 244 CpG island CpG island 5618
Tssr122576 13 53184118 to 53184123 5 - TSS region transcription start site region 122576
Tssr119831 13 53184502 to 53184513 11 + TSS region transcription start site region 119831
C330026N13Rik 13 53185865 to 53186939 1074 unclassified non-coding RNA gene RIKEN cDNA C330026N13 gene
Cpgi5619 13 53285003 to 53286707 1704 CpG island CpG island 5619
Tssr122577 13 53286052 to 53286129 77 - TSS region transcription start site region 122577
Tssr122578 13 53286195 to 53286213 18 - TSS region transcription start site region 122578
Gm33574 13 53286244 to 53294035 7791 + lncRNA gene predicted gene, 33574
Gm33631 13 53308672 to 53309751 1079 - lncRNA gene predicted gene, 33631
Sptlc1 13 53332748 to 53377397 44649 - protein coding gene serine palmitoyltransferase, long chain base subunit 1
Tssr122579 13 53369775 to 53369779 4 - TSS region transcription start site region 122579
Tssr122580 13 53370257 to 53370266 9 - TSS region transcription start site region 122580
Tssr122581 13 53373778 to 53373785 7 - TSS region transcription start site region 122581
Tssr122582 13 53374307 to 53374319 12 - TSS region transcription start site region 122582
Cpgi5620 13 53377045 to 53377579 534 CpG island CpG island 5620
Tssr122583 13 53377355 to 53377373 18 - TSS region transcription start site region 122583
Tssr119832 13 53393589 to 53393678 89 + TSS region transcription start site region 119832
Tssr119833 13 53393682 to 53393694 12 + TSS region transcription start site region 119833
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
1700058M13Rik 13 53403949 to 53414829 10880 lncRNA gene RIKEN cDNA 1700058M13 gene
Gm43262 13 53403950 to 53414830 10880 - lincRNA gene predicted gene 43262
Tssr122584 13 53414821 to 53414832 11 - TSS region transcription start site region 122584
Gm38564 13 53415943 to 53419345 3402 - protein coding gene predicted gene, 38564
Tssr122585 13 53421644 to 53421662 18 - TSS region transcription start site region 122585
Tssr119834 13 53441907 to 53441912 5 + TSS region transcription start site region 119834