Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:50887681-51387685

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm8777 13 50885270 to 50891424 6154 + protein coding gene predicted gene 8777
1700048B10Rik 13 50913817 to 50934152 20335 - lncRNA gene RIKEN cDNA 1700048B10 gene
Tssr122498 13 50934147 to 50934186 39 - TSS region transcription start site region 122498
Gm9702 13 50936043 to 50937246 1203 - pseudogene predicted gene 9702
Tssr119744 13 50950180 to 50950189 9 + TSS region transcription start site region 119744
Gm8779 13 50950222 to 50951017 795 + pseudogene predicted gene 8779
Gm32613 13 50981488 to 50991416 9928 - lncRNA gene predicted gene, 32613
Tssr122499 13 50991327 to 50991337 10 - TSS region transcription start site region 122499
Tssr122500 13 50991355 to 50991376 21 - TSS region transcription start site region 122500
D13Mit166 13 51013133 to 51013330 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 166
Gm22199 13 51014086 to 51014211 125 + unclassified non-coding RNA gene predicted gene, 22199
Tssr122501 13 51015179 to 51015184 5 - TSS region transcription start site region 122501
Tssr122502 13 51026410 to 51026454 44 - TSS region transcription start site region 122502
9430083A17Rik 13 51097738 to 51100727 2989 - lncRNA gene RIKEN cDNA 9430083A17 gene
Cpgi5591 13 51099971 to 51101770 1799 CpG island CpG island 5591
Tssr119745 13 51100473 to 51100492 19 + TSS region transcription start site region 119745
Tssr119746 13 51100494 to 51100515 21 + TSS region transcription start site region 119746
Tssr119747 13 51100781 to 51100799 18 + TSS region transcription start site region 119747
Tssr119748 13 51100810 to 51100933 123 + TSS region transcription start site region 119748
Spin1 13 51100880 to 51152546 51666 + protein coding gene spindlin 1
Tssr119749 13 51101203 to 51101231 28 + TSS region transcription start site region 119749
Tssr122503 13 51101509 to 51101530 21 - TSS region transcription start site region 122503
Tssr119750 13 51132279 to 51132283 4 + TSS region transcription start site region 119750
Tssr119751 13 51137681 to 51137685 4 + TSS region transcription start site region 119751
Tssr119752 13 51157178 to 51157182 4 + TSS region transcription start site region 119752
Tssr119753 13 51166008 to 51166019 11 + TSS region transcription start site region 119753
Cpgi5592 13 51170752 to 51171933 1181 CpG island CpG island 5592
Nxnl2 13 51171022 to 51175188 4166 + protein coding gene nucleoredoxin-like 2
Tssr119754 13 51171234 to 51171258 24 + TSS region transcription start site region 119754
Tssr119755 13 51171295 to 51171305 10 + TSS region transcription start site region 119755
Gm44341 13 51202698 to 51202835 137 + miRNA gene predicted gene, 44341
Hist1h2al 13 51202727 to 51203065 338 - pseudogene histone cluster 1, H2al
Tssr119756 13 51203208 to 51203213 5 + TSS region transcription start site region 119756
Gm29787 13 51205263 to 51206111 848 - pseudogene predicted gene, 29787
Gm46414 13 51208641 to 51372636 163995 + lncRNA gene predicted gene, 46414
Cpgi5593 13 51229279 to 51229687 408 CpG island CpG island 5593
Gm6056 13 51338921 to 51339707 786 + pseudogene predicted gene 6056
Gm47554 13 51344996 to 51345598 602 + pseudogene predicted gene, 47554
Gm32834 13 51378153 to 51418686 40533 - lincRNA gene predicted gene, 32834