Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:40732235-41042252

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfap2a 13 40715302 to 40738237 22935 - protein coding gene transcription factor AP-2, alpha
Gm26688 13 40727808 to 40735162 7354 + antisense lncRNA gene predicted gene, 26688
Cpgi5485 13 40732766 to 40733159 393 CpG island CpG island 5485
Cpgi5486 13 40733451 to 40734871 1420 CpG island CpG island 5486
Tssr122165 13 40733768 to 40733836 68 - TSS region transcription start site region 122165
Tssr122166 13 40733968 to 40733991 23 - TSS region transcription start site region 122166
Tssr119371 13 40734131 to 40734137 6 + TSS region transcription start site region 119371
Cpgi5487 13 40735921 to 40736152 231 CpG island CpG island 5487
Gm47067 13 40737568 to 40739021 1453 + antisense lncRNA gene predicted gene, 47067
Cpgi5488 13 40737697 to 40738205 508 CpG island CpG island 5488
Tssr122167 13 40738236 to 40738246 10 - TSS region transcription start site region 122167
Tssr122168 13 40738373 to 40738386 13 - TSS region transcription start site region 122168
Cpgi5489 13 40738520 to 40738791 271 CpG island CpG island 5489
Cpgi5490 13 40742025 to 40742360 335 CpG island CpG island 5490
Cpgi5491 13 40744621 to 40745132 511 CpG island CpG island 5491
Gm48107 13 40754060 to 40754996 936 - lincRNA gene predicted gene, 48107
Gm6245 13 40778040 to 40778804 764 + pseudogene predicted gene 6245
Gm7201 13 40830797 to 40838656 7859 - pseudogene predicted gene 7201
Gm35160 13 40846739 to 40847554 815 + protein coding gene predicted gene, 35160
Gcnt2 13 40859768 to 40960892 101124 + protein coding gene glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
Tssr119372 13 40859808 to 40859822 14 + TSS region transcription start site region 119372
Tssr119373 13 40859927 to 40859989 62 + TSS region transcription start site region 119373
Tssr119374 13 40860124 to 40860139 15 + TSS region transcription start site region 119374
Tssr119375 13 40860156 to 40860187 31 + TSS region transcription start site region 119375
Tssr119376 13 40860202 to 40860235 33 + TSS region transcription start site region 119376
Mir5124a 13 40865791 to 40865862 71 + miRNA gene microRNA 5124a
Gm48192 13 40873498 to 40874189 691 - unclassified gene predicted gene, 48192
Tssr119377 13 40886797 to 40886818 21 + TSS region transcription start site region 119377
Tssr119378 13 40886937 to 40886944 7 + TSS region transcription start site region 119378
Tssr119379 13 40887093 to 40887116 23 + TSS region transcription start site region 119379
Tssr119380 13 40887181 to 40887199 18 + TSS region transcription start site region 119380
Tssr119381 13 40887235 to 40887252 17 + TSS region transcription start site region 119381
Tssr122169 13 40892673 to 40892686 13 - TSS region transcription start site region 122169
Gm31683 13 40907332 to 40917895 10563 - antisense lncRNA gene predicted gene, 31683
Gm48188 13 40911504 to 40912207 703 - pseudogene predicted gene, 48188
D13Mit61 13 40913258 to 40913421 163 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 61
Cpgi5492 13 40917432 to 40918098 666 CpG island CpG island 5492
Tssr119382 13 40917626 to 40917657 31 + TSS region transcription start site region 119382
Tssr119383 13 40918147 to 40918157 10 + TSS region transcription start site region 119383
Tssr119384 13 40918526 to 40918538 12 + TSS region transcription start site region 119384
Tssr119385 13 40918681 to 40918689 8 + TSS region transcription start site region 119385
A730081D07Rik 13 40927834 to 40960010 32176 - antisense lncRNA gene RIKEN cDNA A730081D07 gene
Tssr119386 13 40944371 to 40944384 13 + TSS region transcription start site region 119386
5530402G07Rik 13 40948889 to 40949631 742 - unclassified gene RIKEN cDNA 5530402G07 gene
Tssr122170 13 40968710 to 40968721 11 - TSS region transcription start site region 122170
Tssr119387 13 40971561 to 40971569 8 + TSS region transcription start site region 119387
Tssr122171 13 40984793 to 40984797 4 - TSS region transcription start site region 122171
Cpgi5493 13 41000426 to 41001616 1190 CpG island CpG island 5493
Tssr122172 13 41000914 to 41000940 26 - TSS region transcription start site region 122172
Tssr119388 13 41001002 to 41001052 50 + TSS region transcription start site region 119388
Pak1ip1 13 41001023 to 41013015 11992 + protein coding gene PAK1 interacting protein 1
Tssr122173 13 41001132 to 41001151 19 - TSS region transcription start site region 122173
Tssr119389 13 41001231 to 41001248 17 + TSS region transcription start site region 119389
Tssr119390 13 41001251 to 41001298 47 + TSS region transcription start site region 119390
Tssr119391 13 41001300 to 41001320 20 + TSS region transcription start site region 119391
Cpgi5494 13 41016091 to 41016823 732 CpG island CpG island 5494
Tssr119392 13 41016275 to 41016309 34 + TSS region transcription start site region 119392
Tmem14c 13 41016292 to 41022586 6294 + protein coding gene transmembrane protein 14C
Tssr119393 13 41016323 to 41016335 12 + TSS region transcription start site region 119393
Mak 13 41025008 to 41079706 54698 - protein coding gene male germ cell-associated kinase
Tssr122174 13 41036042 to 41036064 22 - TSS region transcription start site region 122174