Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:38800598-40263103

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm47509 13 38782161 to 38825755 43594 - lincRNA gene predicted gene, 47509
Gm46392 13 38861730 to 38908237 46507 + lincRNA gene predicted gene, 46392
Gm22035 13 38898360 to 38898587 227 - unclassified non-coding RNA gene predicted gene, 22035
Gm47530 13 38917153 to 38919219 2066 - unclassified gene predicted gene, 47530
Slc35b3 13 38932140 to 38960875 28735 - protein coding gene solute carrier family 35, member B3
Gm26514 13 38945543 to 38951313 5770 - lincRNA gene predicted gene, 26514
Cpgi5473 13 38960074 to 38960896 822 CpG island CpG island 5473
Tssr122142 13 38960457 to 38960466 9 - TSS region transcription start site region 122142
Tssr122143 13 38960478 to 38960496 18 - TSS region transcription start site region 122143
Tssr122144 13 38960498 to 38960539 41 - TSS region transcription start site region 122144
Tssr122145 13 38960542 to 38960554 12 - TSS region transcription start site region 122145
5033403F01Rik 13 38960619 to 38966297 5678 + antisense lncRNA gene RIKEN cDNA 5033403F01 gene
Tssr122146 13 38960846 to 38960883 37 - TSS region transcription start site region 122146
Tssr122147 13 38967115 to 38967150 35 - TSS region transcription start site region 122147
D13Dcr8 13 38968409 to 38968505 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 8
D13Mit137 13 39265532 to 39265662 130 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 137
Gm47348 13 39440565 to 39449671 9106 + lincRNA gene predicted gene, 47348
Gm3509 13 39463227 to 39467017 3790 - lincRNA gene predicted gene 3509
Gm47349 13 39467347 to 39470134 2787 + lincRNA gene predicted gene, 47349
Gm47351 13 39530598 to 39533103 2505 - lincRNA gene predicted gene, 47351
Gm47352 13 39571583 to 39699499 127916 + lincRNA gene predicted gene, 47352
Gm32243 13 39617668 to 39647247 29579 - lincRNA gene predicted gene, 32243
Gm5195 13 39757308 to 39757967 659 + pseudogene predicted gene 5195
Gm40923 13 39771790 to 39791384 19594 - lincRNA gene predicted gene, 40923
Gm46393 13 39791448 to 39794937 3489 + lncRNA gene predicted gene, 46393
Gm47361 13 39796321 to 39796944 623 + pseudogene predicted gene, 47361
Gm46394 13 39803393 to 39806238 2845 - lncRNA gene predicted gene, 46394
A230103O09Rik 13 39823418 to 39831052 7634 + unclassified non-coding RNA gene RIKEN cDNA A230103O09 gene
Tssr119366 13 39824175 to 39824213 38 + TSS region transcription start site region 119366
Cpgi5474 13 39824216 to 39824416 200 CpG island CpG island 5474
Gm23972 13 39858863 to 39859027 164 - snRNA gene predicted gene, 23972
Gm47316 13 39877035 to 39884381 7346 - lincRNA gene predicted gene, 47316
Tssr122148 13 39899287 to 39899299 12 - TSS region transcription start site region 122148
Gm40924 13 39912866 to 39923211 10345 - lncRNA gene predicted gene, 40924
Ofcc1 13 40001882 to 40288011 286129 - protein coding gene orofacial cleft 1 candidate 1