Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:84401508-84581533

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Entpd5 12 84373875 to 84409029 35154 - protein coding gene ectonucleoside triphosphate diphosphohydrolase 5
Cpgi4868 12 84408365 to 84409528 1163 CpG island CpG island 4868
Tssr117009 12 84408973 to 84408983 10 - TSS region transcription start site region 117009
Tssr117010 12 84408991 to 84409034 43 - TSS region transcription start site region 117010
Tssr114341 12 84409039 to 84409102 63 + TSS region transcription start site region 114341
Bbof1 12 84409048 to 84441763 32715 + protein coding gene basal body orientation factor 1
Tssr114342 12 84409106 to 84409128 22 + TSS region transcription start site region 114342
Tssr114343 12 84409137 to 84409152 15 + TSS region transcription start site region 114343
Tssr114344 12 84409166 to 84409176 10 + TSS region transcription start site region 114344
Tssr114345 12 84411160 to 84411163 3 + TSS region transcription start site region 114345
Cpgi4869 12 84417161 to 84417921 760 CpG island CpG island 4869
Rnf113a2 12 84417200 to 84418578 1378 + protein coding gene ring finger protein 113A2
Tssr114346 12 84417235 to 84417254 19 + TSS region transcription start site region 114346
Tssr114347 12 84417256 to 84417300 44 + TSS region transcription start site region 114347
Tssr114348 12 84417306 to 84417321 15 + TSS region transcription start site region 114348
Aldh6a1 12 84430717 to 84451004 20287 - protein coding gene aldehyde dehydrogenase family 6, subfamily A1
Tssr117011 12 84436472 to 84436512 40 - TSS region transcription start site region 117011
Tssr117012 12 84448975 to 84449007 32 - TSS region transcription start site region 117012
Cpgi4870 12 84450589 to 84451589 1000 CpG island CpG island 4870
Tssr117013 12 84450944 to 84451018 74 - TSS region transcription start site region 117013
Lin52 12 84451422 to 84546145 94723 + protein coding gene lin-52 homolog (C. elegans)
Tssr114349 12 84451485 to 84451518 33 + TSS region transcription start site region 114349
Cpgi4871 12 84452034 to 84452211 177 CpG island CpG island 4871
Tssr117014 12 84546155 to 84546194 39 - TSS region transcription start site region 117014
Tssr117015 12 84553035 to 84553084 49 - TSS region transcription start site region 117015
Tssr114350 12 84569821 to 84569835 14 + TSS region transcription start site region 114350
Vsx2 12 84569828 to 84595457 25629 + protein coding gene visual system homeobox 2
Cpgi4872 12 84569906 to 84570490 584 CpG island CpG island 4872
Cpgi4873 12 84570681 to 84572183 1502 CpG island CpG island 4873
Tssr114351 12 84571502 to 84571545 43 + TSS region transcription start site region 114351