Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:113326783-113467225

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scrd2 12 109969663 to 113361762 3392099 heritable phenotypic marker smallest common region of deletion 2
Ighg1 12 113326544 to 113330523 3979 - gene segment immunoglobulin heavy constant gamma 1 (G1m marker)
Tssr117952 12 113329295 to 113329296 1 - TSS region transcription start site region 117952
Tssr117953 12 113329466 to 113329475 9 - TSS region transcription start site region 117953
Tssr117954 12 113329701 to 113329716 15 - TSS region transcription start site region 117954
Tssr117955 12 113330427 to 113330440 13 - TSS region transcription start site region 117955
Tssr117956 12 113330502 to 113330514 12 - TSS region transcription start site region 117956
Tssr117957 12 113330518 to 113330523 5 - TSS region transcription start site region 117957
Ighg3 12 113357442 to 113361232 3790 - gene segment Immunoglobulin heavy constant gamma 3
Tssr115498 12 113359910 to 113359956 46 + TSS region transcription start site region 115498
Tssr117958 12 113360371 to 113360398 27 - TSS region transcription start site region 117958
Tssr3970 12 113360554 to 113360574 20 - TSS region transcription start site region 3970
D12Mit20 12 113361566 to 113361762 196 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 20
Igh-8 12 113365795 to 113367226 1431 gene segment immunoglobulin heavy chain 8 (heavy chain of IgG3)
Tssr117959 12 113366503 to 113366538 35 - TSS region transcription start site region 117959
Gm17421 12 113369522 to 113372201 2679 + pseudogene predicted gene, 17421
Gm9134 12 113381011 to 113381561 550 - pseudogene predicted gene 9134
Cpgi5210 12 113381449 to 113381734 285 CpG island CpG island 5210
Gm9136 12 113396783 to 113397225 442 - pseudogene predicted gene 9136
Gm5190 12 113397229 to 113397585 356 + pseudogene predicted gene 5190
Tssr117960 12 113407307 to 113407318 11 - TSS region transcription start site region 117960
Ighd 12 113407535 to 113416324 8789 - gene segment immunoglobulin heavy constant delta
Tssr117961 12 113414396 to 113414408 12 - TSS region transcription start site region 117961
Tssr117962 12 113414583 to 113414594 11 - TSS region transcription start site region 117962
Tssr117963 12 113415553 to 113415566 13 - TSS region transcription start site region 117963
Tssr117964 12 113416305 to 113416314 9 - TSS region transcription start site region 117964
Ighm 12 113418826 to 113422730 3904 - gene segment immunoglobulin heavy constant mu
D12Mit8 12 113419742 to 113419913 171 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 8
Egq10 12 113419913 to 80909934 -32509979 QTL early growth QTL 10
Lvrq10 12 113419913 to 80909934 -32509979 QTL liver weight QTL 10
Tailaq1 12 113419913 to 80909934 -32509979 QTL tail length adjusted QTL 1
W6q10 12 113419913 to 80909934 -32509979 QTL weight 6 weeks QTL 10
Tssr117965 12 113419994 to 113420006 12 - TSS region transcription start site region 117965
Tssr117966 12 113421115 to 113421132 17 - TSS region transcription start site region 117966
Tssr117967 12 113421159 to 113421174 15 - TSS region transcription start site region 117967
Tssr117968 12 113421188 to 113421199 11 - TSS region transcription start site region 117968
Tssr117969 12 113421422 to 113421441 19 - TSS region transcription start site region 117969
Tssr117970 12 113421469 to 113421492 23 - TSS region transcription start site region 117970
Tssr115499 12 113421605 to 113421617 12 + TSS region transcription start site region 115499
Tssr117971 12 113421632 to 113421692 60 - TSS region transcription start site region 117971
Tssr115500 12 113421641 to 113421661 20 + TSS region transcription start site region 115500
Tssr117972 12 113421998 to 113422012 14 - TSS region transcription start site region 117972
Tssr117973 12 113422034 to 113422043 9 - TSS region transcription start site region 117973
Tssr115501 12 113422040 to 113422075 35 + TSS region transcription start site region 115501
Tssr117974 12 113422067 to 113422118 51 - TSS region transcription start site region 117974
Tssr115502 12 113422082 to 113422101 19 + TSS region transcription start site region 115502
Tssr117975 12 113422142 to 113422171 29 - TSS region transcription start site region 117975
Tssr117976 12 113422201 to 113422229 28 - TSS region transcription start site region 117976
Tssr117977 12 113422235 to 113422271 36 - TSS region transcription start site region 117977
Tssr117978 12 113422386 to 113422414 28 - TSS region transcription start site region 117978
Tssr117979 12 113422511 to 113422518 7 - TSS region transcription start site region 117979
Tssr115503 12 113422529 to 113422542 13 + TSS region transcription start site region 115503
Tssr117980 12 113422532 to 113422548 16 - TSS region transcription start site region 117980
Tssr117981 12 113422631 to 113422641 10 - TSS region transcription start site region 117981
Tssr117982 12 113422652 to 113422661 9 - TSS region transcription start site region 117982
Tssr117983 12 113422692 to 113422714 22 - TSS region transcription start site region 117983
Tssr117984 12 113422735 to 113422744 9 - TSS region transcription start site region 117984
Gm25747 12 113424645 to 113424722 77 - miRNA gene predicted gene, 25747
Gm24022 12 113424724 to 113424783 59 - miRNA gene predicted gene, 24022
Gm22175 12 113425150 to 113425227 77 - miRNA gene predicted gene, 22175
Tssr117985 12 113425361 to 113425390 29 - TSS region transcription start site region 117985
Tssr117986 12 113425420 to 113425434 14 - TSS region transcription start site region 117986
Tssr117987 12 113425476 to 113425498 22 - TSS region transcription start site region 117987
Tssr117988 12 113425679 to 113425694 15 - TSS region transcription start site region 117988
Tssr117989 12 113425708 to 113425732 24 - TSS region transcription start site region 117989
Tssr117990 12 113425765 to 113425776 11 - TSS region transcription start site region 117990
Tssr117991 12 113425792 to 113425838 46 - TSS region transcription start site region 117991
Tssr117992 12 113425924 to 113425969 45 - TSS region transcription start site region 117992
Tssr117993 12 113425992 to 113426030 38 - TSS region transcription start site region 117993
Tssr117994 12 113426691 to 113426701 10 - TSS region transcription start site region 117994
Tssr117995 12 113426767 to 113426780 13 - TSS region transcription start site region 117995
Tssr117996 12 113426783 to 113426794 11 - TSS region transcription start site region 117996
Tssr117997 12 113426823 to 113426882 59 - TSS region transcription start site region 117997
Tssr117998 12 113426890 to 113426906 16 - TSS region transcription start site region 117998
Tssr117999 12 113426916 to 113426947 31 - TSS region transcription start site region 117999
Tssr118000 12 113426960 to 113426971 11 - TSS region transcription start site region 118000
Tssr118001 12 113427285 to 113427294 9 - TSS region transcription start site region 118001
Tssr118002 12 113427317 to 113427330 13 - TSS region transcription start site region 118002
Tssr118003 12 113427332 to 113427396 64 - TSS region transcription start site region 118003
Tssr118004 12 113427407 to 113427422 15 - TSS region transcription start site region 118004
Tssr3971 12 113427466 to 113427473 7 - TSS region transcription start site region 3971
Tssr3972 12 113427510 to 113427513 3 - TSS region transcription start site region 3972
Tssr3973 12 113427523 to 113427531 8 - TSS region transcription start site region 3973
Ighj4 12 113428514 to 113428567 53 - gene segment immunoglobulin heavy joining 4
Tssr118005 12 113428534 to 113428547 13 - TSS region transcription start site region 118005
Tssr118006 12 113428555 to 113428578 23 - TSS region transcription start site region 118006
Tssr118007 12 113428608 to 113428624 16 - TSS region transcription start site region 118007
Tssr118008 12 113428639 to 113428651 12 - TSS region transcription start site region 118008
Tssr118009 12 113428652 to 113428662 10 - TSS region transcription start site region 118009
Tssr118010 12 113428789 to 113428800 11 - TSS region transcription start site region 118010
Tssr118011 12 113428888 to 113428898 10 - TSS region transcription start site region 118011
Ighj3 12 113429085 to 113429132 47 - gene segment immunoglobulin heavy joining 3
Tssr118012 12 113429108 to 113429133 25 - TSS region transcription start site region 118012
Tssr118013 12 113429136 to 113429148 12 - TSS region transcription start site region 118013
Tssr118014 12 113429242 to 113429252 10 - TSS region transcription start site region 118014
Tssr118015 12 113429308 to 113429348 40 - TSS region transcription start site region 118015
Ighj2 12 113429468 to 113429515 47 - gene segment immunoglobulin heavy joining 2
Tssr118016 12 113429490 to 113429502 12 - TSS region transcription start site region 118016
Ighj1 12 113429781 to 113429833 52 - gene segment immunoglobulin heavy joining 1
Tssr118017 12 113429820 to 113429842 22 - TSS region transcription start site region 118017
Tssr115504 12 113430227 to 113430240 13 + TSS region transcription start site region 115504
Tssr118018 12 113430376 to 113430385 9 - TSS region transcription start site region 118018
Tssr118019 12 113430393 to 113430441 48 - TSS region transcription start site region 118019
Tssr118020 12 113430449 to 113430486 37 - TSS region transcription start site region 118020
Ighd4-1 12 113430528 to 113430538 10 - gene segment immunoglobulin heavy diversity 4-1
Tssr118021 12 113430589 to 113430603 14 - TSS region transcription start site region 118021
Tssr118022 12 113430621 to 113430632 11 - TSS region transcription start site region 118022
Tssr118023 12 113430786 to 113430795 9 - TSS region transcription start site region 118023
Tssr115505 12 113446406 to 113446410 4 + TSS region transcription start site region 115505
Ighd3-2 12 113448214 to 113448229 15 - gene segment immunoglobulin heavy diversity 3-2
Ighd5-6 12 113449588 to 113449597 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-6
Ighd2-8 12 113450851 to 113450867 16 - gene segment immunoglobulin heavy diversity 2-8
Ighd5-5 12 113454942 to 113454951 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-5
Ighd2-7 12 113456720 to 113456736 16 - gene segment immunoglobulin heavy diversity 2-7
Ighd5-8 12 113459864 to 113459892 28 - pseudogenic gene segment immunoglobulin heavy diversity 5-8
Ighd5-4 12 113460101 to 113460110 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-4
Ighd2-6 12 113461369 to 113461385 16 - gene segment immunoglobulin heavy diversity 2-6
Ighd5-7 12 113464524 to 113464552 28 - pseudogenic gene segment immunoglobulin heavy diversity 5-7
Ighd5-3 12 113464761 to 113464770 9 - pseudogenic gene segment immunoglobulin heavy diversity 5-3
Ighd2-5 12 113466027 to 113466043 16 - gene segment immunoglobulin heavy diversity 2-5