Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111746227-112546257

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Cpgi5157 12 111758353 to 111759810 1457 CpG island CpG island 5157
Tssr115349 12 111758848 to 111758915 67 + TSS region transcription start site region 115349
Klc1 12 111758849 to 111807844 48995 + protein coding gene kinesin light chain 1
Tssr115350 12 111758923 to 111758939 16 + TSS region transcription start site region 115350
Tssr115351 12 111781753 to 111781770 17 + TSS region transcription start site region 115351
Tssr115352 12 111791109 to 111791174 65 + TSS region transcription start site region 115352
Tssr115353 12 111794753 to 111794764 11 + TSS region transcription start site region 115353
Xrcc3 12 111803192 to 111813873 10681 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 3
Tssr117847 12 111804135 to 111804161 26 - TSS region transcription start site region 117847
Tssr117848 12 111809940 to 111809974 34 - TSS region transcription start site region 117848
Cpgi5158 12 111813441 to 111814971 1530 CpG island CpG island 5158
Tssr117849 12 111813834 to 111813858 24 - TSS region transcription start site region 117849
Zfyve21 12 111814169 to 111828388 14219 + protein coding gene zinc finger, FYVE domain containing 21
Tssr115354 12 111814178 to 111814245 67 + TSS region transcription start site region 115354
Tssr115355 12 111814268 to 111814279 11 + TSS region transcription start site region 115355
Ppp1r13b 12 111828458 to 111908105 79647 - protein coding gene protein phosphatase 1, regulatory subunit 13B
Gm19195 12 111860626 to 111861136 510 - pseudogene predicted gene, 19195
Tssr117850 12 111875655 to 111875659 4 - TSS region transcription start site region 117850
Cpgi5159 12 111907279 to 111909006 1727 CpG island CpG island 5159
Tssr117851 12 111907998 to 111908017 19 - TSS region transcription start site region 117851
Tssr117852 12 111908055 to 111908125 70 - TSS region transcription start site region 117852
Tssr117853 12 111909130 to 111909137 7 - TSS region transcription start site region 117853
Tssr117854 12 111909166 to 111909182 16 - TSS region transcription start site region 117854
Gm40898 12 111920189 to 111923501 3312 + lncRNA gene predicted gene, 40898
Tssr3956 12 111920342 to 111920381 39 + TSS region transcription start site region 3956
Gm3565 12 111930429 to 111931037 608 - pseudogene predicted gene 3565
5033406O09Rik 12 111941991 to 111944482 2491 - lincRNA gene RIKEN cDNA 5033406O09 gene
Tssr115356 12 111944603 to 111944615 12 + TSS region transcription start site region 115356
Tssr115357 12 111944634 to 111944646 12 + TSS region transcription start site region 115357
Gm36757 12 111950517 to 111954152 3635 + lincRNA gene predicted gene, 36757
Atp5mpl 12 111961375 to 111966977 5602 - protein coding gene ATP synthase membrane subunit 6.8PL
Cpgi5160 12 111966582 to 111967146 564 CpG island CpG island 5160
Tssr117855 12 111966668 to 111966698 30 - TSS region transcription start site region 117855
Tssr117856 12 111966728 to 111966775 47 - TSS region transcription start site region 117856
Tssr115358 12 111966785 to 111966791 6 + TSS region transcription start site region 115358
Tssr115359 12 111966794 to 111966830 36 + TSS region transcription start site region 115359
Tssr117857 12 111966954 to 111967017 63 - TSS region transcription start site region 117857
Tssr3957 12 111967028 to 111967034 6 - TSS region transcription start site region 3957
Cpgi5161 12 111971536 to 111971831 295 CpG island CpG island 5161
Tssr115360 12 111971545 to 111971598 53 + TSS region transcription start site region 115360
Tdrd9 12 111971559 to 112068854 97295 + protein coding gene tudor domain containing 9
Tssr115361 12 111971608 to 111971619 11 + TSS region transcription start site region 115361
Rd3l 12 111979191 to 111981128 1937 - protein coding gene retinal degeneration 3-like
Tssr117858 12 111980124 to 111980166 42 - TSS region transcription start site region 117858
Tssr117859 12 111981053 to 111981064 11 - TSS region transcription start site region 117859
Tssr117860 12 111981109 to 111981114 5 - TSS region transcription start site region 117860
Tssr117861 12 111981118 to 111981129 11 - TSS region transcription start site region 117861
Tssr117862 12 111981136 to 111981151 15 - TSS region transcription start site region 117862
Gm46381 12 112015170 to 112015812 642 - lncRNA gene predicted gene, 46381
Aspg 12 112106679 to 112127559 20880 + protein coding gene asparaginase
Tssr115362 12 112106692 to 112106705 13 + TSS region transcription start site region 115362
Tssr115363 12 112106710 to 112106719 9 + TSS region transcription start site region 115363
Tssr115364 12 112106791 to 112106810 19 + TSS region transcription start site region 115364
Tssr115365 12 112106841 to 112106887 46 + TSS region transcription start site region 115365
Cpgi5162 12 112106852 to 112107043 191 CpG island CpG island 5162
Tssr115366 12 112107292 to 112107302 10 + TSS region transcription start site region 115366
Mir3073a 12 112109238 to 112109322 84 + miRNA gene microRNA 3073a
Mir3073b 12 112109250 to 112109309 59 - miRNA gene microRNA 3073b
Tssr115367 12 112110612 to 112110619 7 + TSS region transcription start site region 115367
Cpgi5163 12 112129950 to 112131386 1436 CpG island CpG island 5163
Tssr115368 12 112130779 to 112130785 6 + TSS region transcription start site region 115368
Mir203 12 112130880 to 112130955 75 + miRNA gene microRNA 203
Cpgi5164 12 112143229 to 112147265 4036 CpG island CpG island 5164
Tssr115369 12 112146187 to 112146222 35 + TSS region transcription start site region 115369
Kif26a 12 112146208 to 112181747 35539 + protein coding gene kinesin family member 26A
Tssr115370 12 112146227 to 112146257 30 + TSS region transcription start site region 115370
Cpgi5165 12 112161557 to 112161832 275 CpG island CpG island 5165
Cpgi5166 12 112177873 to 112178056 183 CpG island CpG island 5166
Cpgi5167 12 112195173 to 112195641 468 CpG island CpG island 5167
Gm20368 12 112204701 to 112205153 452 - pseudogene predicted gene, 20368
Gm36894 12 112218602 to 112304837 86235 + lncRNA gene predicted gene, 36894
Gm29890 12 112327809 to 112344784 16975 - lncRNA gene predicted gene, 29890
Gm38123 12 112347289 to 112350067 2778 - unclassified gene predicted gene, 38123
Tssr3958 12 112369109 to 112369110 1 - TSS region transcription start site region 3958
D12Mit1003 12 112385118 to 112385226 108 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
D12Mit1002 12 112385202 to 112385325 123 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1002
E330035G20Rik 12 112391526 to 112405812 14286 - lincRNA gene RIKEN cDNA E330035G20 gene
Tssr117863 12 112405724 to 112405733 9 - TSS region transcription start site region 117863
A730018C14Rik 12 112411023 to 112423198 12175 - lncRNA gene RIKEN cDNA A730018C14 gene
B020018J22Rik 12 112428284 to 112435338 7054 - lincRNA gene Riken cDNA B020018J22 gene
A530016L24Rik 12 112489448 to 112499927 10479 + protein coding gene RIKEN cDNA A530016L24 gene
Tssr115371 12 112489461 to 112489479 18 + TSS region transcription start site region 115371
Tssr115372 12 112489533 to 112489538 5 + TSS region transcription start site region 115372
Tssr115373 12 112490740 to 112490754 14 + TSS region transcription start site region 115373
Tmem179 12 112500184 to 112511160 10976 - protein coding gene transmembrane protein 179
Cpgi5168 12 112510620 to 112511604 984 CpG island CpG island 5168
Tssr117864 12 112511103 to 112511135 32 - TSS region transcription start site region 117864
Tssr117865 12 112511136 to 112511201 65 - TSS region transcription start site region 117865
Gm40584 12 112535662 to 112536991 1329 + lncRNA gene predicted gene, 40584