Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111619268-112009279

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286
Ckb 12 111669361 to 111672338 2977 - protein coding gene creatine kinase, brain
Cpgi5152 12 111669524 to 111669826 302 CpG island CpG island 5152
Tssr117832 12 111670485 to 111670506 21 - TSS region transcription start site region 117832
Cpgi5153 12 111670514 to 111672860 2346 CpG island CpG island 5153
Tssr117833 12 111670626 to 111670637 11 - TSS region transcription start site region 117833
Tssr117834 12 111670736 to 111670745 9 - TSS region transcription start site region 117834
Tssr117835 12 111671268 to 111671287 19 - TSS region transcription start site region 117835
Tssr117836 12 111671322 to 111671332 10 - TSS region transcription start site region 117836
Tssr117837 12 111671481 to 111671492 11 - TSS region transcription start site region 117837
Tssr117838 12 111671536 to 111671591 55 - TSS region transcription start site region 117838
Tssr117839 12 111672083 to 111672089 6 - TSS region transcription start site region 117839
Tssr117840 12 111672290 to 111672306 16 - TSS region transcription start site region 117840
Cpgi5154 12 111677613 to 111678966 1353 CpG island CpG island 5154
Tssr115338 12 111678094 to 111678140 46 + TSS region transcription start site region 115338
Trmt61a 12 111678105 to 111683902 5797 + protein coding gene tRNA methyltransferase 61A
Tssr115339 12 111678146 to 111678160 14 + TSS region transcription start site region 115339
Tssr115340 12 111698615 to 111698624 9 + TSS region transcription start site region 115340
Tssr115341 12 111698633 to 111698640 7 + TSS region transcription start site region 115341
Tssr115342 12 111698641 to 111698649 8 + TSS region transcription start site region 115342
Gm36635 12 111703082 to 111705550 2468 + lincRNA gene predicted gene, 36635
Bag5 12 111709488 to 111713257 3769 - protein coding gene BCL2-associated athanogene 5
Tssr115343 12 111712423 to 111712429 6 + TSS region transcription start site region 115343
Cpgi5155 12 111712490 to 111713750 1260 CpG island CpG island 5155
Tssr117841 12 111712879 to 111712904 25 - TSS region transcription start site region 117841
Tssr117842 12 111712909 to 111712932 23 - TSS region transcription start site region 117842
Tssr117843 12 111712936 to 111712939 3 - TSS region transcription start site region 117843
Tssr117844 12 111712946 to 111712958 12 - TSS region transcription start site region 117844
Tssr115344 12 111712973 to 111712985 12 + TSS region transcription start site region 115344
Tssr115345 12 111713001 to 111713031 30 + TSS region transcription start site region 115345
Tssr117845 12 111713058 to 111713116 58 - TSS region transcription start site region 117845
Tssr117846 12 111713185 to 111713218 33 - TSS region transcription start site region 117846
Tssr115346 12 111713255 to 111713303 48 + TSS region transcription start site region 115346
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Tssr115347 12 111713313 to 111713320 7 + TSS region transcription start site region 115347
Tssr3955 12 111713325 to 111713340 15 + TSS region transcription start site region 3955
Gm15995 12 111726392 to 111727127 735 + unclassified non-coding RNA gene predicted gene 15995
Gm15996 12 111730094 to 111731831 1737 - antisense lncRNA gene predicted gene 15996
Cpgi5156 12 111732486 to 111732851 365 CpG island CpG island 5156
Tssr115348 12 111737680 to 111737683 3 + TSS region transcription start site region 115348
Cpgi5157 12 111758353 to 111759810 1457 CpG island CpG island 5157
Tssr115349 12 111758848 to 111758915 67 + TSS region transcription start site region 115349
Klc1 12 111758849 to 111807844 48995 + protein coding gene kinesin light chain 1
Tssr115350 12 111758923 to 111758939 16 + TSS region transcription start site region 115350
Tssr115351 12 111781753 to 111781770 17 + TSS region transcription start site region 115351
Tssr115352 12 111791109 to 111791174 65 + TSS region transcription start site region 115352
Tssr115353 12 111794753 to 111794764 11 + TSS region transcription start site region 115353
Xrcc3 12 111803192 to 111813873 10681 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 3
Tssr117847 12 111804135 to 111804161 26 - TSS region transcription start site region 117847
Tssr117848 12 111809940 to 111809974 34 - TSS region transcription start site region 117848
Cpgi5158 12 111813441 to 111814971 1530 CpG island CpG island 5158
Tssr117849 12 111813834 to 111813858 24 - TSS region transcription start site region 117849
Zfyve21 12 111814169 to 111828388 14219 + protein coding gene zinc finger, FYVE domain containing 21
Tssr115354 12 111814178 to 111814245 67 + TSS region transcription start site region 115354
Tssr115355 12 111814268 to 111814279 11 + TSS region transcription start site region 115355
Ppp1r13b 12 111828458 to 111908105 79647 - protein coding gene protein phosphatase 1, regulatory subunit 13B
Gm19195 12 111860626 to 111861136 510 - pseudogene predicted gene, 19195
Tssr117850 12 111875655 to 111875659 4 - TSS region transcription start site region 117850
Cpgi5159 12 111907279 to 111909006 1727 CpG island CpG island 5159
Tssr117851 12 111907998 to 111908017 19 - TSS region transcription start site region 117851
Tssr117852 12 111908055 to 111908125 70 - TSS region transcription start site region 117852
Tssr117853 12 111909130 to 111909137 7 - TSS region transcription start site region 117853
Tssr117854 12 111909166 to 111909182 16 - TSS region transcription start site region 117854
Gm40898 12 111920189 to 111923501 3312 + lncRNA gene predicted gene, 40898
Tssr3956 12 111920342 to 111920381 39 + TSS region transcription start site region 3956
Gm3565 12 111930429 to 111931037 608 - pseudogene predicted gene 3565
5033406O09Rik 12 111941991 to 111944482 2491 - lincRNA gene RIKEN cDNA 5033406O09 gene
Tssr115356 12 111944603 to 111944615 12 + TSS region transcription start site region 115356
Tssr115357 12 111944634 to 111944646 12 + TSS region transcription start site region 115357
Gm36757 12 111950517 to 111954152 3635 + lincRNA gene predicted gene, 36757
Atp5mpl 12 111961375 to 111966977 5602 - protein coding gene ATP synthase membrane subunit 6.8PL
Cpgi5160 12 111966582 to 111967146 564 CpG island CpG island 5160
Tssr117855 12 111966668 to 111966698 30 - TSS region transcription start site region 117855
Tssr117856 12 111966728 to 111966775 47 - TSS region transcription start site region 117856
Tssr115358 12 111966785 to 111966791 6 + TSS region transcription start site region 115358
Tssr115359 12 111966794 to 111966830 36 + TSS region transcription start site region 115359
Tssr117857 12 111966954 to 111967017 63 - TSS region transcription start site region 117857
Tssr3957 12 111967028 to 111967034 6 - TSS region transcription start site region 3957
Cpgi5161 12 111971536 to 111971831 295 CpG island CpG island 5161
Tssr115360 12 111971545 to 111971598 53 + TSS region transcription start site region 115360
Tdrd9 12 111971559 to 112068854 97295 + protein coding gene tudor domain containing 9
Tssr115361 12 111971608 to 111971619 11 + TSS region transcription start site region 115361
Rd3l 12 111979191 to 111981128 1937 - protein coding gene retinal degeneration 3-like
Tssr117858 12 111980124 to 111980166 42 - TSS region transcription start site region 117858
Tssr117859 12 111981053 to 111981064 11 - TSS region transcription start site region 117859
Tssr117860 12 111981109 to 111981114 5 - TSS region transcription start site region 117860
Tssr117861 12 111981118 to 111981129 11 - TSS region transcription start site region 117861
Tssr117862 12 111981136 to 111981151 15 - TSS region transcription start site region 117862