Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:111533641-111863649

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr115316 12 111535652 to 111535660 8 + TSS region transcription start site region 115316
Tssr115317 12 111536041 to 111536046 5 + TSS region transcription start site region 115317
Tssr115318 12 111536073 to 111536111 38 + TSS region transcription start site region 115318
Tssr115319 12 111537192 to 111537205 13 + TSS region transcription start site region 115319
Cpgi5150 12 111537447 to 111539371 1924 CpG island CpG island 5150
Tssr117828 12 111537917 to 111537956 39 - TSS region transcription start site region 117828
Eif5 12 111538101 to 111546753 8652 + protein coding gene eukaryotic translation initiation factor 5
Tssr115320 12 111538149 to 111538243 94 + TSS region transcription start site region 115320
Tssr115321 12 111538264 to 111538278 14 + TSS region transcription start site region 115321
Tssr115322 12 111538331 to 111538375 44 + TSS region transcription start site region 115322
Tssr115323 12 111538469 to 111538482 13 + TSS region transcription start site region 115323
Tssr117829 12 111538579 to 111538606 27 - TSS region transcription start site region 117829
Tssr115324 12 111538785 to 111538804 19 + TSS region transcription start site region 115324
Tssr115325 12 111538819 to 111538874 55 + TSS region transcription start site region 115325
Tssr115326 12 111539434 to 111539447 13 + TSS region transcription start site region 115326
Tssr115327 12 111540213 to 111540227 14 + TSS region transcription start site region 115327
Snora28 12 111540946 to 111541067 121 + snoRNA gene small nucleolar RNA, H/ACA box 28
Tssr115328 12 111542172 to 111542201 29 + TSS region transcription start site region 115328
Tssr115329 12 111543659 to 111543692 33 + TSS region transcription start site region 115329
Tssr115330 12 111544997 to 111545028 31 + TSS region transcription start site region 115330
Tssr115331 12 111545327 to 111545345 18 + TSS region transcription start site region 115331
Tssr115332 12 111548062 to 111548066 4 + TSS region transcription start site region 115332
Gm48248 12 111558778 to 111559010 232 - pseudogene predicted gene, 48248
2810029C07Rik 12 111572317 to 111574402 2085 - bidirectional promoter lncRNA gene RIKEN cDNA 2810029C07 gene
Cpgi5151 12 111574057 to 111575771 1714 CpG island CpG island 5151
Tssr117830 12 111574309 to 111574342 33 - TSS region transcription start site region 117830
Tssr117831 12 111574384 to 111574405 21 - TSS region transcription start site region 117831
Tssr115333 12 111574491 to 111574542 51 + TSS region transcription start site region 115333
Mark3 12 111574523 to 111656221 81698 + protein coding gene MAP/microtubule affinity regulating kinase 3
Tssr115334 12 111583624 to 111583629 5 + TSS region transcription start site region 115334
Tssr115335 12 111583640 to 111583654 14 + TSS region transcription start site region 115335
Tssr115336 12 111583662 to 111583665 3 + TSS region transcription start site region 115336
Tssr115337 12 111592649 to 111592672 23 + TSS region transcription start site region 115337
Gm48286 12 111616870 to 111637388 20518 + sense overlapping lncRNA gene predicted gene, 48286
Ckb 12 111669361 to 111672338 2977 - protein coding gene creatine kinase, brain
Cpgi5152 12 111669524 to 111669826 302 CpG island CpG island 5152
Tssr117832 12 111670485 to 111670506 21 - TSS region transcription start site region 117832
Cpgi5153 12 111670514 to 111672860 2346 CpG island CpG island 5153
Tssr117833 12 111670626 to 111670637 11 - TSS region transcription start site region 117833
Tssr117834 12 111670736 to 111670745 9 - TSS region transcription start site region 117834
Tssr117835 12 111671268 to 111671287 19 - TSS region transcription start site region 117835
Tssr117836 12 111671322 to 111671332 10 - TSS region transcription start site region 117836
Tssr117837 12 111671481 to 111671492 11 - TSS region transcription start site region 117837
Tssr117838 12 111671536 to 111671591 55 - TSS region transcription start site region 117838
Tssr117839 12 111672083 to 111672089 6 - TSS region transcription start site region 117839
Tssr117840 12 111672290 to 111672306 16 - TSS region transcription start site region 117840
Cpgi5154 12 111677613 to 111678966 1353 CpG island CpG island 5154
Tssr115338 12 111678094 to 111678140 46 + TSS region transcription start site region 115338
Trmt61a 12 111678105 to 111683902 5797 + protein coding gene tRNA methyltransferase 61A
Tssr115339 12 111678146 to 111678160 14 + TSS region transcription start site region 115339
Tssr115340 12 111698615 to 111698624 9 + TSS region transcription start site region 115340
Tssr115341 12 111698633 to 111698640 7 + TSS region transcription start site region 115341
Tssr115342 12 111698641 to 111698649 8 + TSS region transcription start site region 115342
Gm36635 12 111703082 to 111705550 2468 + lincRNA gene predicted gene, 36635
Bag5 12 111709488 to 111713257 3769 - protein coding gene BCL2-associated athanogene 5
Tssr115343 12 111712423 to 111712429 6 + TSS region transcription start site region 115343
Cpgi5155 12 111712490 to 111713750 1260 CpG island CpG island 5155
Tssr117841 12 111712879 to 111712904 25 - TSS region transcription start site region 117841
Tssr117842 12 111712909 to 111712932 23 - TSS region transcription start site region 117842
Tssr117843 12 111712936 to 111712939 3 - TSS region transcription start site region 117843
Tssr117844 12 111712946 to 111712958 12 - TSS region transcription start site region 117844
Tssr115344 12 111712973 to 111712985 12 + TSS region transcription start site region 115344
Tssr115345 12 111713001 to 111713031 30 + TSS region transcription start site region 115345
Tssr117845 12 111713058 to 111713116 58 - TSS region transcription start site region 117845
Tssr117846 12 111713185 to 111713218 33 - TSS region transcription start site region 117846
Tssr115346 12 111713255 to 111713303 48 + TSS region transcription start site region 115346
Apopt1 12 111713269 to 111755055 41786 + protein coding gene apoptogenic, mitochondrial 1
Tssr115347 12 111713313 to 111713320 7 + TSS region transcription start site region 115347
Tssr3955 12 111713325 to 111713340 15 + TSS region transcription start site region 3955
Gm15995 12 111726392 to 111727127 735 + unclassified non-coding RNA gene predicted gene 15995
Gm15996 12 111730094 to 111731831 1737 - antisense lncRNA gene predicted gene 15996
Cpgi5156 12 111732486 to 111732851 365 CpG island CpG island 5156
Tssr115348 12 111737680 to 111737683 3 + TSS region transcription start site region 115348
Cpgi5157 12 111758353 to 111759810 1457 CpG island CpG island 5157
Tssr115349 12 111758848 to 111758915 67 + TSS region transcription start site region 115349
Klc1 12 111758849 to 111807844 48995 + protein coding gene kinesin light chain 1
Tssr115350 12 111758923 to 111758939 16 + TSS region transcription start site region 115350
Tssr115351 12 111781753 to 111781770 17 + TSS region transcription start site region 115351
Tssr115352 12 111791109 to 111791174 65 + TSS region transcription start site region 115352
Tssr115353 12 111794753 to 111794764 11 + TSS region transcription start site region 115353
Xrcc3 12 111803192 to 111813873 10681 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 3
Tssr117847 12 111804135 to 111804161 26 - TSS region transcription start site region 117847
Tssr117848 12 111809940 to 111809974 34 - TSS region transcription start site region 117848
Cpgi5158 12 111813441 to 111814971 1530 CpG island CpG island 5158
Tssr117849 12 111813834 to 111813858 24 - TSS region transcription start site region 117849
Zfyve21 12 111814169 to 111828388 14219 + protein coding gene zinc finger, FYVE domain containing 21
Tssr115354 12 111814178 to 111814245 67 + TSS region transcription start site region 115354
Tssr115355 12 111814268 to 111814279 11 + TSS region transcription start site region 115355
Ppp1r13b 12 111828458 to 111908105 79647 - protein coding gene protein phosphatase 1, regulatory subunit 13B
Gm19195 12 111860626 to 111861136 510 - pseudogene predicted gene, 19195