Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:109561314-109611407

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Meg3 12 109541001 to 109571726 30725 + lincRNA gene maternally expressed 3
Tssr115112 12 109561598 to 109561610 12 + TSS region transcription start site region 115112
Tssr115113 12 109561611 to 109561625 14 + TSS region transcription start site region 115113
Tssr115114 12 109561635 to 109561650 15 + TSS region transcription start site region 115114
Tssr117753 12 109561750 to 109561765 15 - TSS region transcription start site region 117753
Tssr115115 12 109561910 to 109561923 13 + TSS region transcription start site region 115115
Tssr115116 12 109561963 to 109561978 15 + TSS region transcription start site region 115116
Tssr115117 12 109561995 to 109562013 18 + TSS region transcription start site region 115117
Tssr115118 12 109562304 to 109562318 14 + TSS region transcription start site region 115118
Mir770 12 109563692 to 109563785 93 + miRNA gene microRNA 770
Tssr115119 12 109563764 to 109563768 4 + TSS region transcription start site region 115119
Tssr115120 12 109564664 to 109564676 12 + TSS region transcription start site region 115120
Tssr115121 12 109564699 to 109564715 16 + TSS region transcription start site region 115121
Tssr115122 12 109564894 to 109564911 17 + TSS region transcription start site region 115122
Tssr115123 12 109565927 to 109565939 12 + TSS region transcription start site region 115123
Tssr115124 12 109566318 to 109566332 14 + TSS region transcription start site region 115124
Tssr3950 12 109568181 to 109568196 15 + TSS region transcription start site region 3950
Gm26906 12 109568628 to 109571723 3095 - lincRNA gene predicted gene, 26906
Tssr115125 12 109571639 to 109571672 33 + TSS region transcription start site region 115125
Tssr115126 12 109571675 to 109571702 27 + TSS region transcription start site region 115126
Mir673 12 109571990 to 109572080 90 + miRNA gene microRNA 673
Mir493 12 109580233 to 109580315 82 + miRNA gene microRNA 493
Tssr115127 12 109581012 to 109581016 4 + TSS region transcription start site region 115127
Tssr115128 12 109581513 to 109581532 19 + TSS region transcription start site region 115128
Tssr115129 12 109581713 to 109581735 22 + TSS region transcription start site region 115129
Tssr115130 12 109581869 to 109581917 48 + TSS region transcription start site region 115130
Tssr115131 12 109583661 to 109583678 17 + TSS region transcription start site region 115131
Tssr115132 12 109585047 to 109585063 16 + TSS region transcription start site region 115132
Mir337 12 109585789 to 109585885 96 + miRNA gene microRNA 337
Mirc42 12 109585789 to 109586146 357 complex/cluster/region micro RNA cluster 42, including Mir337 through Mir665
Mir3544 12 109585813 to 109585873 60 - miRNA gene microRNA 3544
Mir540 12 109586080 to 109586146 66 + miRNA gene microRNA 540
Mir665 12 109586314 to 109586407 93 + miRNA gene microRNA 665
Mirc43 12 109586314 to 109611941 25627 complex/cluster/region microRNA cluster 43, including Mir341 through Mir1188
Mir3070a 12 109587943 to 109588031 88 + miRNA gene microRNA 3070a
Mir3070b 12 109588592 to 109588680 88 + miRNA gene microRNA 3070b
Rtl1 12 109590169 to 109595403 5234 - protein coding gene retrotransposon Gaglike 1
Mir431 12 109590447 to 109590537 90 + miRNA gene microRNA 431
Tssr115133 12 109590523 to 109590526 3 + TSS region transcription start site region 115133
Tssr115134 12 109590900 to 109590918 18 + TSS region transcription start site region 115134
6430411K18Rik 12 109591537 to 109592851 1314 + lncRNA gene RIKEN cDNA 6430411K18 gen
Mir433 12 109591715 to 109591838 123 + miRNA gene microRNA 433
Mir127 12 109592846 to 109592915 69 + miRNA gene microRNA 127
Mir434 12 109594506 to 109594599 93 + miRNA gene microRNA 434
Mir432 12 109594956 to 109595030 74 + miRNA gene microRNA 432
Mir3071 12 109595318 to 109595397 79 - miRNA gene microRNA 3071
Mir136 12 109595327 to 109595388 61 + miRNA gene microRNA 136
Tssr115135 12 109595387 to 109595391 4 + TSS region transcription start site region 115135
1110006E14Rik 12 109595804 to 109598538 2734 unclassified non-coding RNA gene RIKEN cDNA 1110006E14 gene
Tssr117754 12 109597093 to 109597097 4 - TSS region transcription start site region 117754
Tssr115136 12 109597486 to 109597496 10 + TSS region transcription start site region 115136
Tssr117755 12 109598536 to 109598541 5 - TSS region transcription start site region 117755
Tssr115137 12 109599280 to 109599284 4 + TSS region transcription start site region 115137
Tssr117756 12 109600328 to 109600348 20 - TSS region transcription start site region 117756
Tssr115138 12 109600819 to 109600824 5 + TSS region transcription start site region 115138
Tssr115139 12 109603013 to 109603024 11 + TSS region transcription start site region 115139
Tssr115140 12 109603038 to 109603067 29 + TSS region transcription start site region 115140
Gm27350 12 109603882 to 109603979 97 + unclassified non-coding RNA gene predicted gene, 27350
Tssr115141 12 109603915 to 109603920 5 + TSS region transcription start site region 115141
Rian 12 109603945 to 109661716 57771 + lncRNA gene RNA imprinted and accumulated in nucleus
Tssr117757 12 109604415 to 109604420 5 - TSS region transcription start site region 117757
Tssr115142 12 109605026 to 109605029 3 + TSS region transcription start site region 115142
Tssr115143 12 109606787 to 109606791 4 + TSS region transcription start site region 115143
Tssr115144 12 109607798 to 109607802 4 + TSS region transcription start site region 115144
Tssr115145 12 109608773 to 109608793 20 + TSS region transcription start site region 115145
Tssr115146 12 109608868 to 109608882 14 + TSS region transcription start site region 115146
Tssr115147 12 109609696 to 109609700 4 + TSS region transcription start site region 115147