Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:98763655-98963690

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106 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Thra 11 98740776 to 98769006 28230 + protein coding gene thyroid hormone receptor alpha
Tssr104785 11 98764972 to 98765022 50 + TSS region transcription start site region 104785
Tssr104786 11 98766258 to 98766277 19 + TSS region transcription start site region 104786
Tssr104787 11 98766314 to 98766347 33 + TSS region transcription start site region 104787
Nr1d1 11 98767932 to 98775333 7401 - protein coding gene nuclear receptor subfamily 1, group D, member 1
Cpgi3768 11 98768215 to 98768728 513 CpG island CpG island 3768
Tssr110587 11 98768224 to 98768237 13 - TSS region transcription start site region 110587
Tssr110588 11 98770317 to 98770353 36 - TSS region transcription start site region 110588
Tssr110589 11 98772120 to 98772132 12 - TSS region transcription start site region 110589
Tssr110590 11 98772951 to 98772971 20 - TSS region transcription start site region 110590
Cpgi3769 11 98773716 to 98774332 616 CpG island CpG island 3769
Tssr110591 11 98773742 to 98773764 22 - TSS region transcription start site region 110591
Tssr110592 11 98774015 to 98774026 11 - TSS region transcription start site region 110592
Tssr110593 11 98774032 to 98774043 11 - TSS region transcription start site region 110593
Tssr110594 11 98775007 to 98775018 11 - TSS region transcription start site region 110594
Tssr110595 11 98775059 to 98775073 14 - TSS region transcription start site region 110595
Tssr110596 11 98775086 to 98775104 18 - TSS region transcription start site region 110596
Cpgi3770 11 98775158 to 98775550 392 CpG island CpG island 3770
Tssr110597 11 98775194 to 98775210 16 - TSS region transcription start site region 110597
Tssr110598 11 98775217 to 98775245 28 - TSS region transcription start site region 110598
Tssr110599 11 98775254 to 98775260 6 - TSS region transcription start site region 110599
Tssr110600 11 98775261 to 98775293 32 - TSS region transcription start site region 110600
Tssr110601 11 98775343 to 98775354 11 - TSS region transcription start site region 110601
Tssr110602 11 98775371 to 98775382 11 - TSS region transcription start site region 110602
Gm31862 11 98775411 to 98783728 8317 + lncRNA gene predicted gene, 31862
Tssr104788 11 98776018 to 98776021 3 + TSS region transcription start site region 104788
Cpgi3771 11 98783383 to 98783643 260 CpG island CpG island 3771
Cpgi3772 11 98789265 to 98789563 298 CpG island CpG island 3772
Cpgi3773 11 98794538 to 98796696 2158 CpG island CpG island 3773
Tssr104789 11 98795171 to 98795209 38 + TSS region transcription start site region 104789
Tssr104790 11 98795237 to 98795254 17 + TSS region transcription start site region 104790
Tssr104791 11 98795469 to 98795483 14 + TSS region transcription start site region 104791
Tssr104792 11 98795495 to 98795574 79 + TSS region transcription start site region 104792
Msl1 11 98795516 to 98807859 12343 + protein coding gene male specific lethal 1
Tssr104793 11 98795821 to 98795840 19 + TSS region transcription start site region 104793
Gm12359 11 98798309 to 98810089 11780 - lncRNA gene predicted gene 12359
Tssr104794 11 98798606 to 98798613 7 + TSS region transcription start site region 104794
Tssr104795 11 98798653 to 98798664 11 + TSS region transcription start site region 104795
Tssr104796 11 98798674 to 98798675 1 + TSS region transcription start site region 104796
Tssr104797 11 98798702 to 98798711 9 + TSS region transcription start site region 104797
Tssr104798 11 98799200 to 98799215 15 + TSS region transcription start site region 104798
Cpgi3774 11 98809494 to 98810429 935 CpG island CpG island 3774
Tssr104799 11 98809787 to 98809810 23 + TSS region transcription start site region 104799
Casc3 11 98809808 to 98833807 23999 + protein coding gene cancer susceptibility candidate 3
Tssr104800 11 98809811 to 98809864 53 + TSS region transcription start site region 104800
Tssr110603 11 98810079 to 98810102 23 - TSS region transcription start site region 110603
Tssr104801 11 98832534 to 98832551 17 + TSS region transcription start site region 104801
Cpgi3775 11 98836588 to 98837612 1024 CpG island CpG island 3775
Tssr104802 11 98836762 to 98836771 9 + TSS region transcription start site region 104802
Tssr104803 11 98836775 to 98836831 56 + TSS region transcription start site region 104803
Rapgefl1 11 98836785 to 98853009 16224 + protein coding gene Rap guanine nucleotide exchange factor (GEF)-like 1
Tssr104804 11 98836836 to 98836859 23 + TSS region transcription start site region 104804
Tssr104805 11 98836867 to 98836878 11 + TSS region transcription start site region 104805
Tssr104806 11 98843798 to 98843800 2 + TSS region transcription start site region 104806
Cpgi3776 11 98845911 to 98846280 369 CpG island CpG island 3776
Cpgi3777 11 98849063 to 98849475 412 CpG island CpG island 3777
Cpgi3778 11 98863337 to 98864524 1187 CpG island CpG island 3778
Tssr104807 11 98863610 to 98863646 36 + TSS region transcription start site region 104807
Wipf2 11 98863638 to 98905040 41402 + protein coding gene WAS/WASL interacting protein family, member 2
Tssr104808 11 98863655 to 98863690 35 + TSS region transcription start site region 104808
Tssr104809 11 98863755 to 98863785 30 + TSS region transcription start site region 104809
Gm23640 11 98870396 to 98870499 103 - snRNA gene predicted gene, 23640
Tssr104810 11 98891183 to 98891201 18 + TSS region transcription start site region 104810
Tssr104811 11 98903201 to 98903214 13 + TSS region transcription start site region 104811
Cpgi3779 11 98907489 to 98908217 728 CpG island CpG island 3779
Cdc6 11 98907801 to 98923940 16139 + protein coding gene cell division cycle 6
Tssr104812 11 98907810 to 98907824 14 + TSS region transcription start site region 104812
Tssr104813 11 98907827 to 98907866 39 + TSS region transcription start site region 104813
Tssr104814 11 98918661 to 98918690 29 + TSS region transcription start site region 104814
Carg4 11 98919441 to 98919441 0 QTL Candida albicans resistance gene 4
Cpgi3780 11 98927682 to 98928232 550 CpG island CpG island 3780
Tssr104815 11 98927785 to 98927810 25 + TSS region transcription start site region 104815
Tssr3664 11 98927814 to 98927824 10 + TSS region transcription start site region 3664
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Tssr104816 11 98927826 to 98927854 28 + TSS region transcription start site region 104816
Cpgi3781 11 98936159 to 98936674 515 CpG island CpG island 3781
Tssr104817 11 98937153 to 98937170 17 + TSS region transcription start site region 104817
Gm46294 11 98937263 to 98942246 4983 - protein coding gene predicted gene, 46294
Cpgi3782 11 98937286 to 98938404 1118 CpG island CpG island 3782
Tssr104818 11 98937669 to 98937735 66 + TSS region transcription start site region 104818
Tssr104819 11 98938376 to 98938387 11 + TSS region transcription start site region 104819
Tssr110604 11 98939610 to 98939623 13 - TSS region transcription start site region 110604
Tssr110605 11 98939649 to 98939679 30 - TSS region transcription start site region 110605
Tssr104820 11 98939898 to 98939910 12 + TSS region transcription start site region 104820
Tssr104821 11 98939914 to 98939944 30 + TSS region transcription start site region 104821
Tssr110606 11 98941907 to 98941932 25 - TSS region transcription start site region 110606
Tssr104822 11 98942387 to 98942396 9 + TSS region transcription start site region 104822
Tssr104823 11 98942487 to 98942499 12 + TSS region transcription start site region 104823
Tssr104824 11 98943473 to 98943505 32 + TSS region transcription start site region 104824
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785