Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:75507459-75637485

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf8 11 75486816 to 75509449 22633 + protein coding gene pre-mRNA processing factor 8
Tssr102960 11 75509950 to 75509997 47 + TSS region transcription start site region 102960
Tssr102961 11 75510077 to 75510104 27 + TSS region transcription start site region 102961
Cpgi3266 11 75510084 to 75510951 867 CpG island CpG island 3266
Rilp 11 75510094 to 75513168 3074 + protein coding gene Rab interacting lysosomal protein
Tssr102962 11 75510106 to 75510128 22 + TSS region transcription start site region 102962
Tssr102963 11 75513530 to 75513541 11 + TSS region transcription start site region 102963
Scarf1 11 75513540 to 75526582 13042 + protein coding gene scavenger receptor class F, member 1
Tssr102964 11 75513548 to 75513582 34 + TSS region transcription start site region 102964
Cpgi3267 11 75515194 to 75515744 550 CpG island CpG island 3267
Tssr102965 11 75516371 to 75516378 7 + TSS region transcription start site region 102965
Gm45606 11 75530277 to 75533071 2794 - antisense lncRNA gene predicted gene 45606
Cpgi3268 11 75530627 to 75532878 2251 CpG island CpG island 3268
Tssr102966 11 75531690 to 75531732 42 + TSS region transcription start site region 102966
Slc43a2 11 75531694 to 75577575 45881 + protein coding gene solute carrier family 43, member 2
Tssr109209 11 75531898 to 75531909 11 - TSS region transcription start site region 109209
Tssr102967 11 75532006 to 75532026 20 + TSS region transcription start site region 102967
Tssr102968 11 75532099 to 75532125 26 + TSS region transcription start site region 102968
Tssr102969 11 75532127 to 75532151 24 + TSS region transcription start site region 102969
Tssr102970 11 75532164 to 75532187 23 + TSS region transcription start site region 102970
Tssr102971 11 75532196 to 75532220 24 + TSS region transcription start site region 102971
Tssr102972 11 75532232 to 75532248 16 + TSS region transcription start site region 102972
Tssr102973 11 75532268 to 75532280 12 + TSS region transcription start site region 102973
Tssr109210 11 75533024 to 75533035 11 - TSS region transcription start site region 109210
Tssr109211 11 75533063 to 75533082 19 - TSS region transcription start site region 109211
Tssr109212 11 75533091 to 75533108 17 - TSS region transcription start site region 109212
Tssr102974 11 75533403 to 75533414 11 + TSS region transcription start site region 102974
Tssr102975 11 75533455 to 75533530 75 + TSS region transcription start site region 102975
Tssr102976 11 75550132 to 75550155 23 + TSS region transcription start site region 102976
Mir3971 11 75551429 to 75551511 82 + miRNA gene microRNA 3971
Tssr3576 11 75561085 to 75561110 25 - TSS region transcription start site region 3576
D11Jcs7 11 75563645 to 75563894 249 DNA segment DNA segment, Chr 11, John C. Schimenti 7
Tssr102977 11 75563653 to 75563666 13 + TSS region transcription start site region 102977
Tssr102978 11 75566859 to 75566875 16 + TSS region transcription start site region 102978
Tssr102979 11 75567979 to 75567993 14 + TSS region transcription start site region 102979
Tssr102980 11 75572459 to 75572485 26 + TSS region transcription start site region 102980
Tssr102981 11 75572512 to 75572545 33 + TSS region transcription start site region 102981
Tssr102982 11 75572719 to 75572735 16 + TSS region transcription start site region 102982
Tssr102983 11 75572746 to 75572791 45 + TSS region transcription start site region 102983
Tssr102984 11 75572812 to 75572824 12 + TSS region transcription start site region 102984
Tssr109213 11 75573228 to 75573244 16 - TSS region transcription start site region 109213
Tssr102985 11 75576772 to 75576786 14 + TSS region transcription start site region 102985
Tssr102986 11 75576890 to 75576909 19 + TSS region transcription start site region 102986
Tssr102987 11 75576937 to 75576950 13 + TSS region transcription start site region 102987
Tssr102988 11 75577016 to 75577045 29 + TSS region transcription start site region 102988
Tssr102989 11 75577090 to 75577124 34 + TSS region transcription start site region 102989
Tssr102990 11 75577127 to 75577138 11 + TSS region transcription start site region 102990
Cpgi3269 11 75587828 to 75588845 1017 CpG island CpG island 3269
Tssr102991 11 75588064 to 75588151 87 + TSS region transcription start site region 102991
Pitpna 11 75588097 to 75628804 40707 + protein coding gene phosphatidylinositol transfer protein, alpha
Tssr102992 11 75588153 to 75588177 24 + TSS region transcription start site region 102992
4931413K12Rik 11 75590024 to 75594766 4742 - lncRNA gene RIKEN cDNA 4931413K12 gene
Tssr109214 11 75594736 to 75594741 5 - TSS region transcription start site region 109214
Tssr109215 11 75594743 to 75594760 17 - TSS region transcription start site region 109215
Tssr109216 11 75594763 to 75594764 1 - TSS region transcription start site region 109216
Tssr109217 11 75594765 to 75594783 18 - TSS region transcription start site region 109217
Tssr109218 11 75594793 to 75594804 11 - TSS region transcription start site region 109218
Tssr102993 11 75594910 to 75594921 11 + TSS region transcription start site region 102993
Tssr102994 11 75596124 to 75596146 22 + TSS region transcription start site region 102994
Tssr102995 11 75596150 to 75596162 12 + TSS region transcription start site region 102995
Tssr102996 11 75598233 to 75598265 32 + TSS region transcription start site region 102996
Tssr102997 11 75598274 to 75598302 28 + TSS region transcription start site region 102997
Tssr102998 11 75598895 to 75598907 12 + TSS region transcription start site region 102998
Gm12338 11 75599763 to 75599954 191 - pseudogene predicted gene 12338
Tssr109219 11 75600046 to 75600051 5 - TSS region transcription start site region 109219
Tssr102999 11 75601479 to 75601500 21 + TSS region transcription start site region 102999
Tssr103000 11 75607882 to 75607895 13 + TSS region transcription start site region 103000
Tssr103001 11 75612704 to 75612714 10 + TSS region transcription start site region 103001
Tssr103002 11 75615044 to 75615047 3 + TSS region transcription start site region 103002
Tssr103003 11 75619521 to 75619538 17 + TSS region transcription start site region 103003
Tssr103004 11 75620660 to 75620682 22 + TSS region transcription start site region 103004
Tssr103005 11 75620694 to 75620712 18 + TSS region transcription start site region 103005
Tssr103006 11 75626291 to 75626329 38 + TSS region transcription start site region 103006
Tssr109220 11 75626717 to 75626733 16 - TSS region transcription start site region 109220
Cpgi3270 11 75630554 to 75631378 824 CpG island CpG island 3270
Tssr109221 11 75630722 to 75630763 41 - TSS region transcription start site region 109221
Tssr103007 11 75630759 to 75630770 11 + TSS region transcription start site region 103007
Tssr103008 11 75630774 to 75630803 29 + TSS region transcription start site region 103008
Tssr109222 11 75630798 to 75630807 9 - TSS region transcription start site region 109222
Tssr3577 11 75630805 to 75630811 6 + TSS region transcription start site region 3577
Tssr103009 11 75630815 to 75630830 15 + TSS region transcription start site region 103009
Tssr103010 11 75630832 to 75630851 19 + TSS region transcription start site region 103010
Tssr103011 11 75630948 to 75630959 11 + TSS region transcription start site region 103011
Tssr103012 11 75630974 to 75631076 102 + TSS region transcription start site region 103012
Inpp5k 11 75630988 to 75648871 17883 + protein coding gene inositol polyphosphate 5-phosphatase K
Tssr103013 11 75631086 to 75631100 14 + TSS region transcription start site region 103013
Tssr103014 11 75636759 to 75636814 55 + TSS region transcription start site region 103014
Tssr103015 11 75636817 to 75636848 31 + TSS region transcription start site region 103015