Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59088392-59368397

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obscn 11 58994256 to 59136375 142119 - protein coding gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Tssr101785 11 59116459 to 59116460 1 + TSS region transcription start site region 101785
Tssr108196 11 59120925 to 59120962 37 - TSS region transcription start site region 108196
Cpgi2950 11 59134387 to 59136471 2084 CpG island CpG island 2950
Tssr108197 11 59139247 to 59139280 33 - TSS region transcription start site region 108197
Iba57 11 59155369 to 59163739 8370 - protein coding gene IBA57 homolog, iron-sulfur cluster assembly
Cpgi2951 11 59163103 to 59164080 977 CpG island CpG island 2951
Tssr108198 11 59163281 to 59163323 42 - TSS region transcription start site region 108198
Tssr108199 11 59163696 to 59163726 30 - TSS region transcription start site region 108199
Tssr108200 11 59163759 to 59163788 29 - TSS region transcription start site region 108200
Tssr108201 11 59164527 to 59164548 21 - TSS region transcription start site region 108201
Gjc2 11 59175568 to 59183213 7645 - protein coding gene gap junction protein, gamma 2
Cpgi2952 11 59175783 to 59177833 2050 CpG island CpG island 2952
Tssr108202 11 59182794 to 59182801 7 - TSS region transcription start site region 108202
Tssr108203 11 59182810 to 59182833 23 - TSS region transcription start site region 108203
Guk1 11 59183875 to 59192212 8337 - protein coding gene guanylate kinase 1
Tssr108204 11 59187738 to 59187767 29 - TSS region transcription start site region 108204
Cpgi2953 11 59191431 to 59192269 838 CpG island CpG island 2953
Tssr108205 11 59191791 to 59191843 52 - TSS region transcription start site region 108205
Tssr101786 11 59192129 to 59192145 16 + TSS region transcription start site region 101786
2610507I01Rik 11 59199836 to 59202385 2549 - lncRNA gene RIKEN cDNA 2610507I01 gene
Tssr108206 11 59201682 to 59201697 15 - TSS region transcription start site region 108206
Tssr108207 11 59201712 to 59201739 27 - TSS region transcription start site region 108207
Cpgi2954 11 59202026 to 59202970 944 CpG island CpG island 2954
Tssr108208 11 59202141 to 59202154 13 - TSS region transcription start site region 108208
Tssr108209 11 59202169 to 59202209 40 - TSS region transcription start site region 108209
Tssr108210 11 59202376 to 59202394 18 - TSS region transcription start site region 108210
Tssr101787 11 59202480 to 59202529 49 + TSS region transcription start site region 101787
Mrpl55 11 59202486 to 59206134 3648 + protein coding gene mitochondrial ribosomal protein L55
Tssr101788 11 59204624 to 59204672 48 + TSS region transcription start site region 101788
Cpgi2955 11 59207947 to 59209400 1453 CpG island CpG island 2955
Gm10434 11 59208246 to 59208720 474 - pseudogene predicted gene 10434
Tssr101789 11 59208329 to 59208355 26 + TSS region transcription start site region 101789
Tssr101790 11 59208357 to 59208419 62 + TSS region transcription start site region 101790
2310033P09Rik 11 59208361 to 59210736 2375 + protein coding gene RIKEN cDNA 2310033P09 gene
Tssr108211 11 59208664 to 59208680 16 - TSS region transcription start site region 108211
Tssr101791 11 59208794 to 59208799 5 + TSS region transcription start site region 101791
Tssr101792 11 59209123 to 59209164 41 + TSS region transcription start site region 101792
Arf1 11 59211412 to 59228267 16855 - protein coding gene ADP-ribosylation factor 1
Tssr108212 11 59212511 to 59212535 24 - TSS region transcription start site region 108212
Tssr108213 11 59212666 to 59212688 22 - TSS region transcription start site region 108213
Cpgi2956 11 59227302 to 59229044 1742 CpG island CpG island 2956
Tssr108214 11 59227879 to 59227930 51 - TSS region transcription start site region 108214
Tssr108215 11 59228208 to 59228247 39 - TSS region transcription start site region 108215
Tssr101793 11 59228392 to 59228397 5 + TSS region transcription start site region 101793
Wnt3a 11 59248036 to 59290751 42715 - protein coding gene wingless-type MMTV integration site family, member 3A
Cpgi2957 11 59249583 to 59250100 517 CpG island CpG island 2957
Cpgi2958 11 59263748 to 59264652 904 CpG island CpG island 2958
Cpgi2959 11 59288689 to 59291376 2687 CpG island CpG island 2959
Tssr108216 11 59290746 to 59290758 12 - TSS region transcription start site region 108216
Cpgi2960 11 59305995 to 59308371 2376 CpG island CpG island 2960
Tssr101794 11 59306920 to 59306935 15 + TSS region transcription start site region 101794
Wnt9a 11 59306928 to 59333552 26624 + protein coding gene wingless-type MMTV integration site family, member 9A
Tssr101795 11 59319680 to 59319685 5 + TSS region transcription start site region 101795
Tssr3512 11 59331388 to 59331391 3 + TSS region transcription start site region 3512
Gm24756 11 59337051 to 59337146 95 - miRNA gene predicted gene, 24756
Sluc36 11 59365791 to 69591873 10226082 QTL susceptibility to lung cancer 36
Sluc36a 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36a
Sluc36b 11 59365791 to 59365904 113 QTL susceptibility to lung cancer 36b
D11Mit316 11 59365791 to 59365904 113 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 316