Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:57172993-57828617

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gria1 11 57011571 to 57330244 318673 + protein coding gene glutamate receptor, ionotropic, AMPA1 (alpha 1)
Tssr108111 11 57199389 to 57199392 3 - TSS region transcription start site region 108111
Gm12242 11 57449107 to 57449844 737 + pseudogene predicted gene 12242
Tssr108112 11 57481783 to 57481787 4 - TSS region transcription start site region 108112
Fam114a2 11 57482993 to 57518617 35624 - protein coding gene family with sequence similarity 114, member A2
Tssr108113 11 57507041 to 57507052 11 - TSS region transcription start site region 108113
Tssr108114 11 57507102 to 57507106 4 - TSS region transcription start site region 108114
Tssr108115 11 57507110 to 57507115 5 - TSS region transcription start site region 108115
Tssr108116 11 57507129 to 57507134 5 - TSS region transcription start site region 108116
Tssr3505 11 57513856 to 57513857 1 - TSS region transcription start site region 3505
Cpgi2906 11 57518044 to 57519037 993 CpG island CpG island 2906
Tssr101637 11 57518241 to 57518249 8 + TSS region transcription start site region 101637
Tssr108117 11 57518596 to 57518655 59 - TSS region transcription start site region 108117
Tssr101638 11 57518657 to 57518722 65 + TSS region transcription start site region 101638
Mfap3 11 57518664 to 57533815 15151 + protein coding gene microfibrillar-associated protein 3
Gm12243 11 57572512 to 57574595 2083 + lincRNA gene predicted gene 12243
4930486A15Rik 11 57601576 to 57602671 1095 unclassified gene RIKEN cDNA 4930486A15 gene
4933424L21Rik 11 57623698 to 57649494 25796 - antisense lncRNA gene RIKEN cDNA 4933424L21 gene
Tssr101639 11 57644590 to 57644617 27 + TSS region transcription start site region 101639
Cpgi2907 11 57644619 to 57646030 1411 CpG island CpG island 2907
Tssr101640 11 57645417 to 57645489 72 + TSS region transcription start site region 101640
Galnt10 11 57645442 to 57787501 142059 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 10
Tssr108118 11 57649465 to 57649498 33 - TSS region transcription start site region 108118
Tssr101641 11 57649568 to 57649571 3 + TSS region transcription start site region 101641
4933426K07Rik 11 57655415 to 57657826 2411 - antisense lncRNA gene RIKEN cDNA 4933426K07 gene
Tssr108119 11 57657805 to 57657839 34 - TSS region transcription start site region 108119
5830435N06Rik 11 57665726 to 57667169 1443 unclassified gene RIKEN cDNA 5830435N06 gene
Gm46282 11 57706093 to 57710163 4070 + lncRNA gene predicted gene, 46282
Tssr101642 11 57708976 to 57708997 21 + TSS region transcription start site region 101642
Tssr101643 11 57717311 to 57717314 3 + TSS region transcription start site region 101643
Gm24582 11 57741300 to 57741402 102 + snRNA gene predicted gene, 24582
n-R5s69 11 57764427 to 57764545 118 + rRNA gene nuclear encoded rRNA 5S 69
2010001A14Rik 11 57795499 to 57801417 5918 - lncRNA gene RIKEN cDNA 2010001A14 gene
Cpgi2908 11 57800700 to 57802833 2133 CpG island CpG island 2908
Tssr108120 11 57801411 to 57801432 21 - TSS region transcription start site region 108120
Tssr108121 11 57801436 to 57801453 17 - TSS region transcription start site region 108121
Tssr108122 11 57801459 to 57801487 28 - TSS region transcription start site region 108122
Tssr101644 11 57801575 to 57801649 74 + TSS region transcription start site region 101644
Sap30l 11 57801637 to 57810217 8580 + protein coding gene SAP30-like
Tssr101645 11 57807330 to 57807332 2 + TSS region transcription start site region 101645
Cpgi2909 11 57825040 to 57825240 200 CpG island CpG island 2909
Cpgi2910 11 57827530 to 57828360 830 CpG island CpG island 2910