Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:7150000-16750000

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443 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adcy1 11 7063489 to 7178506 115017 + protein coding gene adenylate cyclase 1
Tssr106770 11 7152394 to 7152404 10 - TSS region transcription start site region 106770
Tssr100293 11 7160050 to 7160063 13 + TSS region transcription start site region 100293
Cccd201 11 7183157 to 7188569 5412 - lncRNA gene coiled coil domain 201
Tssr100294 11 7197650 to 7197656 6 + TSS region transcription start site region 100294
Tssr100295 11 7197780 to 7197795 15 + TSS region transcription start site region 100295
Igfbp1 11 7197787 to 7202546 4759 + protein coding gene insulin-like growth factor binding protein 1
Tssr100296 11 7197804 to 7197811 7 + TSS region transcription start site region 100296
Tssr100297 11 7197832 to 7197839 7 + TSS region transcription start site region 100297
Tssr100298 11 7197852 to 7197854 2 + TSS region transcription start site region 100298
Cpgi2570 11 7197888 to 7198331 443 CpG island CpG island 2570
Tssr3421 11 7199820 to 7199828 8 + TSS region transcription start site region 3421
Tssr100299 11 7199853 to 7199856 3 + TSS region transcription start site region 100299
Tssr100300 11 7199884 to 7199894 10 + TSS region transcription start site region 100300
Tssr106771 11 7200821 to 7200829 8 - TSS region transcription start site region 106771
Tssr100301 11 7201972 to 7201983 11 + TSS region transcription start site region 100301
Igfbp3 11 7206086 to 7213923 7837 - protein coding gene insulin-like growth factor binding protein 3
Tssr106772 11 7207185 to 7207213 28 - TSS region transcription start site region 106772
Tssr100302 11 7207365 to 7207380 15 + TSS region transcription start site region 100302
Tssr106773 11 7208410 to 7208428 18 - TSS region transcription start site region 106773
Tssr106774 11 7209506 to 7209512 6 - TSS region transcription start site region 106774
Tssr100303 11 7210015 to 7210023 8 + TSS region transcription start site region 100303
Tssr106775 11 7210182 to 7210194 12 - TSS region transcription start site region 106775
Cpgi2571 11 7213044 to 7214512 1468 CpG island CpG island 2571
Tssr106776 11 7213414 to 7213421 7 - TSS region transcription start site region 106776
Tssr106777 11 7213440 to 7213454 14 - TSS region transcription start site region 106777
Tssr106778 11 7213535 to 7213615 80 - TSS region transcription start site region 106778
Tssr106779 11 7213816 to 7213823 7 - TSS region transcription start site region 106779
Tssr106780 11 7213850 to 7213859 9 - TSS region transcription start site region 106780
Tssr106781 11 7213915 to 7213929 14 - TSS region transcription start site region 106781
Tssr106782 11 7213943 to 7213990 47 - TSS region transcription start site region 106782
Tssr106783 11 7214169 to 7214179 10 - TSS region transcription start site region 106783
Gm36565 11 7217097 to 7262326 45229 + lncRNA gene predicted gene, 36565
Tssr106784 11 7232189 to 7232192 3 - TSS region transcription start site region 106784
Gm11986 11 7270351 to 7290374 20023 - lincRNA gene predicted gene 11986
Gm36653 11 7404694 to 7423332 18638 + lncRNA gene predicted gene, 36653
Gm36720 11 7428876 to 7432935 4059 + lncRNA gene predicted gene, 36720
n-TDgtc10 11 7869777 to 7869848 71 + tRNA gene nuclear encoded tRNA aspartic acid 10 (anticodon GTC)
Gm27393 11 7886444 to 7886505 61 - snRNA gene predicted gene, 27393
Tssr100304 11 7977078 to 7977083 5 + TSS region transcription start site region 100304
Gm11987 11 7994164 to 7995852 1688 - pseudogene predicted gene 11987
Gm24051 11 8004942 to 8005016 74 - snoRNA gene predicted gene, 24051
Gm11988 11 8112363 to 8114094 1731 - pseudogene predicted gene 11988
D11Dcr32 11 8117582 to 8117677 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 32
D11Dcr33 11 8240417 to 8240512 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 33
Cpgi2572 11 8345059 to 8345247 188 CpG island CpG island 2572
Gm11989 11 8383182 to 8383853 671 - pseudogene predicted gene 11989
D11Dcr34 11 8431175 to 8431272 97 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 34
Tns3 11 8431652 to 8664535 232883 - protein coding gene tensin 3
Tssr106785 11 8445095 to 8445102 7 - TSS region transcription start site region 106785
Tssr106786 11 8446133 to 8446154 21 - TSS region transcription start site region 106786
Tssr106787 11 8446233 to 8446236 3 - TSS region transcription start site region 106787
Tssr106788 11 8446286 to 8446291 5 - TSS region transcription start site region 106788
Tssr106789 11 8455269 to 8455291 22 - TSS region transcription start site region 106789
Tssr106790 11 8468450 to 8468459 9 - TSS region transcription start site region 106790
Tssr106791 11 8468467 to 8468477 10 - TSS region transcription start site region 106791
Tssr106792 11 8468488 to 8468511 23 - TSS region transcription start site region 106792
Cpgi2573 11 8468515 to 8469034 519 CpG island CpG island 2573
Tssr106793 11 8468516 to 8468545 29 - TSS region transcription start site region 106793
Tssr106794 11 8468555 to 8468560 5 - TSS region transcription start site region 106794
Tssr106795 11 8468571 to 8468580 9 - TSS region transcription start site region 106795
Tssr106796 11 8468648 to 8468706 58 - TSS region transcription start site region 106796
Tssr106797 11 8468707 to 8468757 50 - TSS region transcription start site region 106797
Tssr106798 11 8468817 to 8468822 5 - TSS region transcription start site region 106798
Tssr106799 11 8477141 to 8477152 11 - TSS region transcription start site region 106799
Tssr106800 11 8479925 to 8479931 6 - TSS region transcription start site region 106800
Tssr106801 11 8492406 to 8492411 5 - TSS region transcription start site region 106801
D11Dcr4 11 8495930 to 8496025 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 4
Tssr106802 11 8503783 to 8503794 11 - TSS region transcription start site region 106802
Tssr106803 11 8503796 to 8503803 7 - TSS region transcription start site region 106803
Tssr106804 11 8503886 to 8503910 24 - TSS region transcription start site region 106804
Tssr106805 11 8505035 to 8505045 10 - TSS region transcription start site region 106805
Tssr106806 11 8514464 to 8514467 3 - TSS region transcription start site region 106806
Tssr106807 11 8531733 to 8531767 34 - TSS region transcription start site region 106807
Tssr100305 11 8545340 to 8545342 2 + TSS region transcription start site region 100305
Tssr106808 11 8549219 to 8549244 25 - TSS region transcription start site region 106808
Tssr106809 11 8558399 to 8558410 11 - TSS region transcription start site region 106809
Tssr106810 11 8558974 to 8558985 11 - TSS region transcription start site region 106810
Tssr100306 11 8569849 to 8569858 9 + TSS region transcription start site region 100306
Tssr106811 11 8573446 to 8573452 6 - TSS region transcription start site region 106811
Tssr106812 11 8575315 to 8575363 48 - TSS region transcription start site region 106812
Tssr106813 11 8575589 to 8575592 3 - TSS region transcription start site region 106813
Tssr106814 11 8575613 to 8575633 20 - TSS region transcription start site region 106814
Tssr106815 11 8575655 to 8575666 11 - TSS region transcription start site region 106815
Tssr106816 11 8577232 to 8577247 15 - TSS region transcription start site region 106816
Tssr106817 11 8579179 to 8579184 5 - TSS region transcription start site region 106817
Tssr106818 11 8579204 to 8579212 8 - TSS region transcription start site region 106818
Tssr106819 11 8579245 to 8579267 22 - TSS region transcription start site region 106819
Tssr106820 11 8579405 to 8579430 25 - TSS region transcription start site region 106820
Tssr106821 11 8579462 to 8579504 42 - TSS region transcription start site region 106821
Tssr106822 11 8579702 to 8579720 18 - TSS region transcription start site region 106822
Tssr106823 11 8579811 to 8579820 9 - TSS region transcription start site region 106823
Tssr106824 11 8579850 to 8579858 8 - TSS region transcription start site region 106824
Tssr106825 11 8579959 to 8579965 6 - TSS region transcription start site region 106825
Tssr106826 11 8587258 to 8587306 48 - TSS region transcription start site region 106826
Tssr106827 11 8589438 to 8589441 3 - TSS region transcription start site region 106827
Tssr100307 11 8589807 to 8589822 15 + TSS region transcription start site region 100307
Tssr100308 11 8594835 to 8594852 17 + TSS region transcription start site region 100308
Tssr106828 11 8600718 to 8600747 29 - TSS region transcription start site region 106828
Tssr106829 11 8600756 to 8600766 10 - TSS region transcription start site region 106829
Tssr106830 11 8600782 to 8600803 21 - TSS region transcription start site region 106830
Tssr106831 11 8601131 to 8601144 13 - TSS region transcription start site region 106831
Tssr100309 11 8605082 to 8605093 11 + TSS region transcription start site region 100309
Tssr106832 11 8605213 to 8605232 19 - TSS region transcription start site region 106832
Tssr106833 11 8605239 to 8605257 18 - TSS region transcription start site region 106833
Tssr106834 11 8605291 to 8605302 11 - TSS region transcription start site region 106834
Tssr106835 11 8612229 to 8612236 7 - TSS region transcription start site region 106835
Tssr106836 11 8622552 to 8622585 33 - TSS region transcription start site region 106836
Cpgi2574 11 8623932 to 8624930 998 CpG island CpG island 2574
Tssr106837 11 8624173 to 8624219 46 - TSS region transcription start site region 106837
Tssr106838 11 8624600 to 8624615 15 - TSS region transcription start site region 106838
Tssr106839 11 8624620 to 8624657 37 - TSS region transcription start site region 106839
Tssr106840 11 8624674 to 8624695 21 - TSS region transcription start site region 106840
Tssr106841 11 8624723 to 8624774 51 - TSS region transcription start site region 106841
Tssr106842 11 8624900 to 8624918 18 - TSS region transcription start site region 106842
Tssr106843 11 8635906 to 8635914 8 - TSS region transcription start site region 106843
D11Mit129 11 8644794 to 8644931 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 129
Tssr106844 11 8653184 to 8653188 4 - TSS region transcription start site region 106844
Tssr100310 11 8655619 to 8655656 37 + TSS region transcription start site region 100310
Cpgi2575 11 8663672 to 8664876 1204 CpG island CpG island 2575
Tssr106845 11 8664043 to 8664064 21 - TSS region transcription start site region 106845
Tssr106846 11 8664067 to 8664114 47 - TSS region transcription start site region 106846
Tssr106847 11 8664499 to 8664551 52 - TSS region transcription start site region 106847
Tssr106848 11 8664553 to 8664594 41 - TSS region transcription start site region 106848
Tssr106849 11 8664667 to 8664681 14 - TSS region transcription start site region 106849
Tssr100311 11 8708931 to 8708939 8 + TSS region transcription start site region 100311
Tssr100312 11 8722633 to 8722677 44 + TSS region transcription start site region 100312
Tssr100313 11 8773623 to 8773635 12 + TSS region transcription start site region 100313
Tssr100314 11 8773637 to 8773646 9 + TSS region transcription start site region 100314
Gm36772 11 8796577 to 8799607 3030 - lncRNA gene predicted gene, 36772
Gm11990 11 8805955 to 8806725 770 - pseudogene predicted gene 11990
Pkd1l1 11 8826708 to 8973266 146558 - protein coding gene polycystic kidney disease 1 like 1
Gm40815 11 8884173 to 8885303 1130 + pseudogene predicted gene, 40815
Gm11991 11 8884223 to 8885296 1073 - pseudogene predicted gene 11991
Tssr106850 11 8903717 to 8903727 10 - TSS region transcription start site region 106850
D11Mit226 11 8904955 to 8905093 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 226
Gm40814 11 8921301 to 8927994 6693 + protein coding gene predicted gene, 40814
Gm46271 11 8924024 to 8925221 1197 + lncRNA gene predicted gene, 46271
Hus1 11 8993137 to 9011191 18054 - protein coding gene HUS1 checkpoint clamp component
Tssr100315 11 9010675 to 9010709 34 + TSS region transcription start site region 100315
Cpgi2576 11 9010829 to 9011330 501 CpG island CpG island 2576
Tssr106851 11 9011111 to 9011164 53 - TSS region transcription start site region 106851
Sun3 11 9016054 to 9048991 32937 - protein coding gene Sad1 and UNC84 domain containing 3
Tshp9 11 9026225 to 9026374 149 QTL tooth shape 9
D11Mit62 11 9026225 to 9026374 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 62
Skull15 11 9026225 to 9026374 149 QTL skull morphology 15
Lmr6 11 9026225 to 9026374 149 QTL leishmaniasis resistance 6
Tssr106852 11 9039579 to 9039584 5 - TSS region transcription start site region 106852
Tssr106853 11 9039585 to 9039601 16 - TSS region transcription start site region 106853
Tssr106854 11 9039618 to 9039625 7 - TSS region transcription start site region 106854
Cpgi2577 11 9048390 to 9049190 800 CpG island CpG island 2577
Tssr106855 11 9048473 to 9048489 16 - TSS region transcription start site region 106855
Tssr106856 11 9048493 to 9048511 18 - TSS region transcription start site region 106856
Tssr106857 11 9048514 to 9048521 7 - TSS region transcription start site region 106857
Tssr100316 11 9048575 to 9048630 55 + TSS region transcription start site region 100316
Gm11992 11 9048592 to 9069354 20762 + protein coding gene predicted gene 11992
Tssr100317 11 9048698 to 9048711 13 + TSS region transcription start site region 100317
Tssr100318 11 9048829 to 9048839 10 + TSS region transcription start site region 100318
Tssr3422 11 9049033 to 9049043 10 + TSS region transcription start site region 3422
Tssr100319 11 9049047 to 9049061 14 + TSS region transcription start site region 100319
Tssr100320 11 9049069 to 9049082 13 + TSS region transcription start site region 100320
Tssr100321 11 9049098 to 9049110 12 + TSS region transcription start site region 100321
Tssr100322 11 9117952 to 9117990 38 + TSS region transcription start site region 100322
Tssr100323 11 9117998 to 9118017 19 + TSS region transcription start site region 100323
Tssr100324 11 9118070 to 9118091 21 + TSS region transcription start site region 100324
Tssr3423 11 9118098 to 9118133 35 + TSS region transcription start site region 3423
Upp1 11 9118103 to 9136170 18067 + protein coding gene uridine phosphorylase 1
Tssr3424 11 9118134 to 9118141 7 + TSS region transcription start site region 3424
Cpgi2578 11 9118352 to 9119440 1088 CpG island CpG island 2578
Tssr100325 11 9118536 to 9118556 20 + TSS region transcription start site region 100325
Tssr100326 11 9118571 to 9118593 22 + TSS region transcription start site region 100326
Tssr100327 11 9118619 to 9118634 15 + TSS region transcription start site region 100327
Tssr100328 11 9119223 to 9119230 7 + TSS region transcription start site region 100328
Tssr100329 11 9119279 to 9119296 17 + TSS region transcription start site region 100329
Tssr100330 11 9120056 to 9120064 8 + TSS region transcription start site region 100330
Tssr100331 11 9125114 to 9125143 29 + TSS region transcription start site region 100331
Tssr100332 11 9125157 to 9125170 13 + TSS region transcription start site region 100332
Tssr100333 11 9131624 to 9131631 7 + TSS region transcription start site region 100333
Tssr100334 11 9139300 to 9139301 1 + TSS region transcription start site region 100334
Gm11993 11 9149778 to 9150597 819 - pseudogene predicted gene 11993
Cpgi2579 11 9150380 to 9150674 294 CpG island CpG island 2579
Tssr100335 11 9191769 to 9191779 10 + TSS region transcription start site region 100335
Tssr100336 11 9191790 to 9191799 9 + TSS region transcription start site region 100336
Tssr100337 11 9191934 to 9191948 14 + TSS region transcription start site region 100337
Abca13 11 9191942 to 9684259 492317 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 13
Tssr100338 11 9193415 to 9193428 13 + TSS region transcription start site region 100338
Tssr100339 11 9255627 to 9255628 1 + TSS region transcription start site region 100339
Tssr3425 11 9598077 to 9598078 1 + TSS region transcription start site region 3425
Gm36954 11 9705261 to 9705623 362 - unclassified gene predicted gene, 36954
D11Mit259 11 9736728 to 9736842 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 259
Eif3s6-ps1 11 9737152 to 9737621 469 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 1
Tssr106858 11 9873737 to 9873754 17 - TSS region transcription start site region 106858
Tssr106859 11 9873808 to 9873816 8 - TSS region transcription start site region 106859
Gm11996 11 10239337 to 10240251 914 + pseudogene predicted gene 11996
Tssr100340 11 10292213 to 10292215 2 + TSS region transcription start site region 100340
Gm20551 11 10374770 to 10375082 312 - pseudogene predicted gene, 20551
Gm11997 11 10376770 to 10377082 312 - pseudogene predicted gene 11997
Gm46255 11 10438451 to 10441867 3416 - protein coding gene predicted gene, 46255
Tssr3426 11 10545135 to 10545136 1 + TSS region transcription start site region 3426
Cpgi2580 11 11113806 to 11114755 949 CpG island CpG island 2580