Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:116115559-116343077

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim65 11 116124708 to 116131260 6552 - protein coding gene tripartite motif-containing 65
Tssr111852 11 116125326 to 116125331 5 - TSS region transcription start site region 111852
Cpgi4166 11 116130259 to 116131225 966 CpG island CpG island 4166
Tssr111853 11 116131001 to 116131041 40 - TSS region transcription start site region 111853
Tssr111854 11 116131053 to 116131062 9 - TSS region transcription start site region 111854
Tssr111855 11 116131073 to 116131100 27 - TSS region transcription start site region 111855
Tssr111856 11 116131110 to 116131131 21 - TSS region transcription start site region 111856
Mrpl38 11 116131817 to 116138868 7051 - protein coding gene mitochondrial ribosomal protein L38
Tssr111857 11 116132520 to 116132540 20 - TSS region transcription start site region 111857
Tssr111858 11 116132573 to 116132584 11 - TSS region transcription start site region 111858
Tssr111859 11 116132877 to 116132912 35 - TSS region transcription start site region 111859
Cpgi4167 11 116138220 to 116139096 876 CpG island CpG island 4167
Tssr111860 11 116138775 to 116138788 13 - TSS region transcription start site region 111860
Tssr111861 11 116138789 to 116138848 59 - TSS region transcription start site region 111861
Tssr111862 11 116138850 to 116138859 9 - TSS region transcription start site region 111862
Tssr111863 11 116138862 to 116138873 11 - TSS region transcription start site region 111863
Fbf1 11 116142285 to 116168166 25881 - protein coding gene Fas (TNFRSF6) binding factor 1
Cpgi4168 11 116146476 to 116146670 194 CpG island CpG island 4168
Cpgi4169 11 116148939 to 116149201 262 CpG island CpG island 4169
Gm26413 11 116163910 to 116164035 125 - snoRNA gene predicted gene, 26413
Cpgi4170 11 116167710 to 116168507 797 CpG island CpG island 4170
Tssr111864 11 116168138 to 116168205 67 - TSS region transcription start site region 111864
Tssr111865 11 116168295 to 116168306 11 - TSS region transcription start site region 111865
Acox1 11 116171888 to 116199045 27157 - protein coding gene acyl-Coenzyme A oxidase 1, palmitoyl
Tssr111866 11 116173085 to 116173103 18 - TSS region transcription start site region 111866
Tssr111867 11 116173130 to 116173169 39 - TSS region transcription start site region 111867
Tssr111868 11 116173232 to 116173258 26 - TSS region transcription start site region 111868
Tssr111869 11 116173276 to 116173351 75 - TSS region transcription start site region 111869
Tssr111870 11 116174424 to 116174445 21 - TSS region transcription start site region 111870
Tssr111871 11 116174472 to 116174486 14 - TSS region transcription start site region 111871
Tssr111872 11 116174703 to 116174721 18 - TSS region transcription start site region 111872
Tssr111873 11 116174731 to 116174794 63 - TSS region transcription start site region 111873
Tssr111874 11 116174817 to 116174821 4 - TSS region transcription start site region 111874
Tssr111875 11 116174854 to 116174867 13 - TSS region transcription start site region 111875
Tssr111876 11 116175159 to 116175169 10 - TSS region transcription start site region 111876
Tssr111877 11 116175188 to 116175195 7 - TSS region transcription start site region 111877
Tssr111878 11 116175245 to 116175261 16 - TSS region transcription start site region 111878
Tssr111879 11 116178169 to 116178181 12 - TSS region transcription start site region 111879
Tssr111880 11 116178275 to 116178306 31 - TSS region transcription start site region 111880
D11Dcr39 11 116186707 to 116186808 101 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 39
Tssr111881 11 116186895 to 116186899 4 - TSS region transcription start site region 111881
Tssr105948 11 116189414 to 116189460 46 + TSS region transcription start site region 105948
Tssr111882 11 116189542 to 116189550 8 - TSS region transcription start site region 111882
Tssr111883 11 116193538 to 116193561 23 - TSS region transcription start site region 111883
Tssr111884 11 116197987 to 116197997 10 - TSS region transcription start site region 111884
Tssr111885 11 116198254 to 116198269 15 - TSS region transcription start site region 111885
Tssr111886 11 116198332 to 116198347 15 - TSS region transcription start site region 111886
Cpgi4171 11 116198400 to 116199404 1004 CpG island CpG island 4171
Tssr111887 11 116198659 to 116198663 4 - TSS region transcription start site region 111887
Tssr111888 11 116198673 to 116198677 4 - TSS region transcription start site region 111888
Tssr111889 11 116198701 to 116198836 135 - TSS region transcription start site region 111889
Tssr105949 11 116198853 to 116198903 50 + TSS region transcription start site region 105949
Ten1 11 116198855 to 116215318 16463 + protein coding gene TEN1 telomerase capping complex subunit
Tssr111890 11 116199006 to 116199037 31 - TSS region transcription start site region 111890
Tssr111891 11 116199040 to 116199090 50 - TSS region transcription start site region 111891
Tssr111892 11 116206477 to 116206484 7 - TSS region transcription start site region 111892
Tssr105950 11 116210963 to 116211006 43 + TSS region transcription start site region 105950
Cdk3 11 116216003 to 116220287 4284 + polymorphic pseudogene cyclin-dependent kinase 3
Evpl 11 116220559 to 116238077 17518 - protein coding gene envoplakin
Cpgi4172 11 116221819 to 116223150 1331 CpG island CpG island 4172
Gm33250 11 116225260 to 116239239 13979 + lncRNA gene predicted gene, 33250
Cpgi4173 11 116232652 to 116232999 347 CpG island CpG island 4173
Tssr105951 11 116232711 to 116232728 17 + TSS region transcription start site region 105951
Cpgi4174 11 116237861 to 116238373 512 CpG island CpG island 4174
Tssr111893 11 116238083 to 116238097 14 - TSS region transcription start site region 111893
Srp68 11 116245166 to 116274217 29051 - protein coding gene signal recognition particle 68
Tssr111894 11 116247198 to 116247216 18 - TSS region transcription start site region 111894
Tssr111895 11 116262891 to 116262923 32 - TSS region transcription start site region 111895
Tssr111896 11 116273335 to 116273342 7 - TSS region transcription start site region 111896
Cpgi4175 11 116273507 to 116274570 1063 CpG island CpG island 4175
Tssr111897 11 116274102 to 116274138 36 - TSS region transcription start site region 111897
Tssr105952 11 116274164 to 116274183 19 + TSS region transcription start site region 105952
Tssr111898 11 116274197 to 116274208 11 - TSS region transcription start site region 111898
Galr2 11 116280939 to 116283938 2999 + protein coding gene galanin receptor 2
Cpgi4176 11 116281174 to 116282138 964 CpG island CpG island 4176
Cpgi4177 11 116282748 to 116283730 982 CpG island CpG island 4177
Exoc7 11 116287998 to 116306749 18751 - protein coding gene exocyst complex component 7
Tssr111899 11 116292475 to 116292476 1 - TSS region transcription start site region 111899
Tssr111900 11 116300320 to 116300337 17 - TSS region transcription start site region 111900
Cpgi4178 11 116306103 to 116307209 1106 CpG island CpG island 4178
Tssr111901 11 116306675 to 116306691 16 - TSS region transcription start site region 111901
Tssr111902 11 116306696 to 116306750 54 - TSS region transcription start site region 111902
Gm26730 11 116306864 to 116309510 2646 + lincRNA gene predicted gene, 26730
Tssr111903 11 116307168 to 116307190 22 - TSS region transcription start site region 111903
Cpgi4179 11 116318990 to 116319619 629 CpG island CpG island 4179
n-R5s74 11 116326602 to 116326717 115 - rRNA gene nuclear encoded rRNA 5S 74
Tssr111904 11 116329427 to 116329440 13 - TSS region transcription start site region 111904
Tssr105953 11 116330475 to 116330490 15 + TSS region transcription start site region 105953
Foxj1 11 116330704 to 116335399 4695 - protein coding gene forkhead box J1
Cpgi4180 11 116333935 to 116336041 2106 CpG island CpG island 4180
Tssr111905 11 116334147 to 116334179 32 - TSS region transcription start site region 111905
Tssr111906 11 116334208 to 116334234 26 - TSS region transcription start site region 111906
Tssr111907 11 116335350 to 116335365 15 - TSS region transcription start site region 111907
Tssr111908 11 116335384 to 116335399 15 - TSS region transcription start site region 111908
Tssr111909 11 116335400 to 116335415 15 - TSS region transcription start site region 111909
Rnf157 11 116336353 to 116413032 76679 - protein coding gene ring finger protein 157