Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:109350855-109573598

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93 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700096J18Rik 11 109346867 to 109353651 6784 + lncRNA gene RIKEN cDNA 1700096J18 gene
Tssr105636 11 109353699 to 109353721 22 + TSS region transcription start site region 105636
Gm11696 11 109354778 to 109363654 8876 - lncRNA gene predicted gene 11696
Tssr111532 11 109358742 to 109358779 37 - TSS region transcription start site region 111532
Tssr105637 11 109359584 to 109359614 30 + TSS region transcription start site region 105637
Tssr105638 11 109361935 to 109361942 7 + TSS region transcription start site region 105638
Cpgi4053 11 109361988 to 109363754 1766 CpG island CpG island 4053
Tssr105639 11 109362029 to 109362045 16 + TSS region transcription start site region 105639
Tssr105640 11 109362061 to 109362075 14 + TSS region transcription start site region 105640
Tssr105641 11 109362088 to 109362104 16 + TSS region transcription start site region 105641
Tssr111533 11 109362442 to 109362450 8 - TSS region transcription start site region 111533
Tssr111534 11 109362465 to 109362475 10 - TSS region transcription start site region 111534
Tssr111535 11 109362534 to 109362604 70 - TSS region transcription start site region 111535
Tssr105642 11 109362706 to 109362739 33 + TSS region transcription start site region 105642
Tssr105643 11 109362771 to 109362854 83 + TSS region transcription start site region 105643
Gna13 11 109362831 to 109401369 38538 + protein coding gene guanine nucleotide binding protein, alpha 13
Tssr105644 11 109362855 to 109362868 13 + TSS region transcription start site region 105644
Tssr105645 11 109362873 to 109362878 5 + TSS region transcription start site region 105645
Tssr105646 11 109362883 to 109362907 24 + TSS region transcription start site region 105646
Tssr105647 11 109362926 to 109362977 51 + TSS region transcription start site region 105647
Tssr105648 11 109363064 to 109363076 12 + TSS region transcription start site region 105648
Tssr111536 11 109363181 to 109363213 32 - TSS region transcription start site region 111536
Tssr105649 11 109363782 to 109363786 4 + TSS region transcription start site region 105649
Tssr105650 11 109365030 to 109365061 31 + TSS region transcription start site region 105650
Tssr105651 11 109365062 to 109365063 1 + TSS region transcription start site region 105651
Tssr105652 11 109365082 to 109365088 6 + TSS region transcription start site region 105652
Tssr105653 11 109365098 to 109365154 56 + TSS region transcription start site region 105653
Tssr105654 11 109365174 to 109365191 17 + TSS region transcription start site region 105654
Tssr105655 11 109365503 to 109365514 11 + TSS region transcription start site region 105655
Tssr111537 11 109366977 to 109367012 35 - TSS region transcription start site region 111537
Tssr105656 11 109386558 to 109386588 30 + TSS region transcription start site region 105656
Tssr105657 11 109394227 to 109394234 7 + TSS region transcription start site region 105657
Tssr105658 11 109397276 to 109397286 10 + TSS region transcription start site region 105658
Tssr105659 11 109397376 to 109397400 24 + TSS region transcription start site region 105659
Tssr105660 11 109397428 to 109397482 54 + TSS region transcription start site region 105660
Tssr105661 11 109397540 to 109397639 99 + TSS region transcription start site region 105661
Tssr105662 11 109397642 to 109397664 22 + TSS region transcription start site region 105662
Tssr105663 11 109398860 to 109398891 31 + TSS region transcription start site region 105663
Tssr105664 11 109399037 to 109399057 20 + TSS region transcription start site region 105664
Tssr105665 11 109399341 to 109399369 28 + TSS region transcription start site region 105665
Tssr105666 11 109399484 to 109399515 31 + TSS region transcription start site region 105666
Tssr105667 11 109400821 to 109400840 19 + TSS region transcription start site region 105667
Tssr105668 11 109413909 to 109413927 18 + TSS region transcription start site region 105668
9930022D16Rik 11 109413917 to 109420405 6488 + protein coding gene RIKEN cDNA 9930022D16 gene
Tssr111538 11 109414861 to 109414872 11 - TSS region transcription start site region 111538
Tssr111539 11 109420634 to 109420646 12 - TSS region transcription start site region 111539
Cpgi4054 11 109425428 to 109426449 1021 CpG island CpG island 4054
Tssr105669 11 109425580 to 109425600 20 + TSS region transcription start site region 105669
Tssr105670 11 109425608 to 109425622 14 + TSS region transcription start site region 105670
Tssr105671 11 109425664 to 109425677 13 + TSS region transcription start site region 105671
Tssr111540 11 109425760 to 109425770 10 - TSS region transcription start site region 111540
Tssr105672 11 109425940 to 109425952 12 + TSS region transcription start site region 105672
Amz2 11 109425946 to 109438148 12202 + protein coding gene archaelysin family metallopeptidase 2
Tssr105673 11 109425967 to 109426010 43 + TSS region transcription start site region 105673
Tssr105674 11 109426154 to 109426222 68 + TSS region transcription start site region 105674
Tssr105675 11 109426223 to 109426255 32 + TSS region transcription start site region 105675
Tssr105676 11 109426372 to 109426389 17 + TSS region transcription start site region 105676
Tssr3712 11 109427017 to 109427027 10 + TSS region transcription start site region 3712
Tssr105677 11 109432711 to 109432730 19 + TSS region transcription start site region 105677
Gm15642 11 109437172 to 109438145 973 - lncRNA gene predicted gene 15642
Cpgi4055 11 109439944 to 109440354 410 CpG island CpG island 4055
Tssr105678 11 109440072 to 109440079 7 + TSS region transcription start site region 105678
Gm45916 11 109440078 to 109453359 13281 + lncRNA gene predicted gene, 45916
Tssr105679 11 109440097 to 109440173 76 + TSS region transcription start site region 105679
Slc16a6 11 109450855 to 109473598 22743 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 6
Tssr105680 11 109452731 to 109452749 18 + TSS region transcription start site region 105680
Tssr111541 11 109452867 to 109452885 18 - TSS region transcription start site region 111541
Tssr111542 11 109453072 to 109453082 10 - TSS region transcription start site region 111542
Cpgi4056 11 109454953 to 109455309 356 CpG island CpG island 4056
Gm25540 11 109466311 to 109466431 120 - miRNA gene predicted gene, 25540
Cpgi4057 11 109472100 to 109472772 672 CpG island CpG island 4057
Tssr105681 11 109472236 to 109472247 11 + TSS region transcription start site region 105681
Tssr111543 11 109472580 to 109472591 11 - TSS region transcription start site region 111543
Tssr111544 11 109472611 to 109472639 28 - TSS region transcription start site region 111544
Tssr111545 11 109472972 to 109472991 19 - TSS region transcription start site region 111545
Cpgi4058 11 109472981 to 109474312 1331 CpG island CpG island 4058
Tssr111546 11 109473036 to 109473050 14 - TSS region transcription start site region 111546
Tssr111547 11 109473065 to 109473079 14 - TSS region transcription start site region 111547
Tssr111548 11 109473093 to 109473112 19 - TSS region transcription start site region 111548
Tssr111549 11 109473133 to 109473153 20 - TSS region transcription start site region 111549
Tssr111550 11 109473220 to 109473278 58 - TSS region transcription start site region 111550
Arsg 11 109473374 to 109573330 99956 + protein coding gene arylsulfatase G
Tssr111551 11 109473656 to 109473666 10 - TSS region transcription start site region 111551
Tssr111552 11 109473735 to 109473746 11 - TSS region transcription start site region 111552
Tssr111553 11 109473761 to 109473785 24 - TSS region transcription start site region 111553
Tssr105682 11 109485631 to 109485713 82 + TSS region transcription start site region 105682
Tssr105683 11 109488574 to 109488588 14 + TSS region transcription start site region 105683
Gm22378 11 109499714 to 109499824 110 - snRNA gene predicted gene, 22378
Tibmd1 11 109500000 to 62700000 -46800000 QTL tibia midshaft diameter 1, 5 week
Tssr105684 11 109525313 to 109525343 30 + TSS region transcription start site region 105684
Tssr105685 11 109543694 to 109543736 42 + TSS region transcription start site region 105685
Tssr111554 11 109549828 to 109549835 7 - TSS region transcription start site region 111554
Wipi1 11 109573521 to 109611389 37868 - protein coding gene WD repeat domain, phosphoinositide interacting 1