Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102199259-102419275

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdac5 11 102194432 to 102230166 35734 - protein coding gene histone deacetylase 5
Tssr111013 11 102216665 to 102216669 4 - TSS region transcription start site region 111013
Tssr105197 11 102216761 to 102216804 43 + TSS region transcription start site region 105197
Cpgi3908 11 102218493 to 102218784 291 CpG island CpG island 3908
Tssr111014 11 102218823 to 102218851 28 - TSS region transcription start site region 111014
Tssr111015 11 102218923 to 102218935 12 - TSS region transcription start site region 111015
Cpgi3909 11 102224733 to 102225098 365 CpG island CpG island 3909
Tssr111016 11 102224773 to 102224821 48 - TSS region transcription start site region 111016
Cpgi3910 11 102229480 to 102230535 1055 CpG island CpG island 3910
Mir8101 11 102230040 to 102230150 110 - miRNA gene microRNA 8101
Tssr111017 11 102230091 to 102230122 31 - TSS region transcription start site region 111017
Tssr111018 11 102230127 to 102230166 39 - TSS region transcription start site region 111018
Cpgi3911 11 102245043 to 102245515 472 CpG island CpG island 3911
Tssr105198 11 102245377 to 102245415 38 + TSS region transcription start site region 105198
Cpgi3912 11 102248749 to 102249301 552 CpG island CpG island 3912
Tssr105199 11 102248842 to 102248888 46 + TSS region transcription start site region 105199
BC030867 11 102248882 to 102265187 16305 + protein coding gene cDNA sequence BC030867
Tssr105200 11 102248891 to 102248937 46 + TSS region transcription start site region 105200
Tssr105201 11 102262221 to 102262230 9 + TSS region transcription start site region 105201
Tssr105202 11 102262240 to 102262252 12 + TSS region transcription start site region 105202
Tssr105203 11 102268732 to 102268761 29 + TSS region transcription start site region 105203
Tssr105204 11 102268769 to 102268778 9 + TSS region transcription start site region 105204
Tssr105205 11 102268779 to 102268788 9 + TSS region transcription start site region 105205
Asb16 11 102268823 to 102278061 9238 + protein coding gene ankyrin repeat and SOCS box-containing 16
Cpgi3913 11 102276323 to 102276910 587 CpG island CpG island 3913
Tssr105206 11 102276657 to 102276689 32 + TSS region transcription start site region 105206
Tssr105207 11 102276805 to 102276833 28 + TSS region transcription start site region 105207
Cpgi3914 11 102284568 to 102285548 980 CpG island CpG island 3914
Tmub2 11 102284931 to 102289237 4306 + protein coding gene transmembrane and ubiquitin-like domain containing 2
Tssr105208 11 102284932 to 102285033 101 + TSS region transcription start site region 105208
Tssr105209 11 102285161 to 102285251 90 + TSS region transcription start site region 105209
Atxn7l3 11 102289300 to 102296631 7331 - protein coding gene ataxin 7-like 3
Tssr105210 11 102295469 to 102295474 5 + TSS region transcription start site region 105210
Cpgi3915 11 102295618 to 102297878 2260 CpG island CpG island 3915
Tssr111019 11 102296256 to 102296316 60 - TSS region transcription start site region 111019
Tssr111020 11 102296618 to 102296681 63 - TSS region transcription start site region 111020
Tssr111021 11 102296751 to 102296812 61 - TSS region transcription start site region 111021
Gm33851 11 102296813 to 102297917 1104 + lncRNA gene predicted gene, 33851
Tssr111022 11 102296981 to 102296998 17 - TSS region transcription start site region 111022
Ubtf 11 102304560 to 102319742 15182 - protein coding gene upstream binding transcription factor, RNA polymerase I
Tssr111023 11 102306047 to 102306070 23 - TSS region transcription start site region 111023
Cpgi3916 11 102308867 to 102309492 625 CpG island CpG island 3916
Tssr105211 11 102309259 to 102309275 16 + TSS region transcription start site region 105211
Tssr105212 11 102309289 to 102309309 20 + TSS region transcription start site region 105212
Cpgi3917 11 102316349 to 102320727 4378 CpG island CpG island 3917
Tssr111024 11 102316607 to 102316646 39 - TSS region transcription start site region 111024
Tssr111025 11 102316660 to 102316678 18 - TSS region transcription start site region 111025
Tssr111026 11 102316691 to 102316708 17 - TSS region transcription start site region 111026
Tssr105213 11 102316848 to 102316859 11 + TSS region transcription start site region 105213
Tssr105214 11 102316874 to 102316969 95 + TSS region transcription start site region 105214
Tssr105215 11 102317004 to 102317015 11 + TSS region transcription start site region 105215
Tssr111027 11 102317623 to 102317642 19 - TSS region transcription start site region 111027
Tssr111028 11 102317760 to 102317785 25 - TSS region transcription start site region 111028
Tssr111029 11 102317787 to 102317816 29 - TSS region transcription start site region 111029
Tssr111030 11 102317860 to 102317877 17 - TSS region transcription start site region 111030
Tssr111031 11 102318036 to 102318061 25 - TSS region transcription start site region 111031
Tssr111032 11 102318941 to 102319004 63 - TSS region transcription start site region 111032
Tssr111033 11 102319093 to 102319105 12 - TSS region transcription start site region 111033
Tssr111034 11 102319342 to 102319349 7 - TSS region transcription start site region 111034
Tssr111035 11 102319382 to 102319446 64 - TSS region transcription start site region 111035
C030013E06Rik 11 102319788 to 102320242 454 unclassified gene RIKEN cDNA C030013E06 gene
Tssr111036 11 102319825 to 102319859 34 - TSS region transcription start site region 111036
Tssr111037 11 102320265 to 102320278 13 - TSS region transcription start site region 111037
Slc4a1 11 102348820 to 102365281 16461 - protein coding gene solute carrier family 4 (anion exchanger), member 1
Tssr111038 11 102349295 to 102349299 4 - TSS region transcription start site region 111038
Tssr111039 11 102349404 to 102349414 10 - TSS region transcription start site region 111039
Tssr111040 11 102349748 to 102349779 31 - TSS region transcription start site region 111040
Tssr111041 11 102349969 to 102349986 17 - TSS region transcription start site region 111041
Tssr111042 11 102350108 to 102350128 20 - TSS region transcription start site region 111042
Tssr111043 11 102350181 to 102350199 18 - TSS region transcription start site region 111043
Tssr111044 11 102353232 to 102353255 23 - TSS region transcription start site region 111044
Tssr111045 11 102353277 to 102353289 12 - TSS region transcription start site region 111045
Tssr111046 11 102353298 to 102353313 15 - TSS region transcription start site region 111046
Tssr111047 11 102353316 to 102353344 28 - TSS region transcription start site region 111047
Tssr111048 11 102354358 to 102354375 17 - TSS region transcription start site region 111048
Tssr111049 11 102356114 to 102356142 28 - TSS region transcription start site region 111049
Tssr111050 11 102356166 to 102356192 26 - TSS region transcription start site region 111050
Tssr111051 11 102356210 to 102356240 30 - TSS region transcription start site region 111051
Tssr111052 11 102356437 to 102356450 13 - TSS region transcription start site region 111052
Tssr111053 11 102356494 to 102356506 12 - TSS region transcription start site region 111053
Tssr111054 11 102356828 to 102356839 11 - TSS region transcription start site region 111054
Tssr111055 11 102356889 to 102356911 22 - TSS region transcription start site region 111055
Tssr111056 11 102357084 to 102357096 12 - TSS region transcription start site region 111056
Tssr111057 11 102357161 to 102357172 11 - TSS region transcription start site region 111057
Tssr111058 11 102358477 to 102358501 24 - TSS region transcription start site region 111058
Tssr111059 11 102360565 to 102360570 5 - TSS region transcription start site region 111059
Tssr105216 11 102361176 to 102361202 26 + TSS region transcription start site region 105216
Tssr111060 11 102361445 to 102361457 12 - TSS region transcription start site region 111060
Tssr111061 11 102363692 to 102363704 12 - TSS region transcription start site region 111061
Tssr111062 11 102365111 to 102365168 57 - TSS region transcription start site region 111062
Tssr3684 11 102365173 to 102365178 5 - TSS region transcription start site region 3684
Bloodlinc 11 102375551 to 102377020 1469 - lincRNA gene Bloodlinc, erythroid developmental long intergenic non-protein coding transcript
Cpgi3918 11 102375679 to 102375960 281 CpG island CpG island 3918
Gm34253 11 102376044 to 102381581 5537 + lncRNA gene predicted gene, 34253
Cpgi3919 11 102393054 to 102393945 891 CpG island CpG island 3919
Rundc3a 11 102393403 to 102402555 9152 + protein coding gene RUN domain containing 3A
Tssr105217 11 102393419 to 102393496 77 + TSS region transcription start site region 105217
Tssr105218 11 102393521 to 102393542 21 + TSS region transcription start site region 105218
Tssr105219 11 102393551 to 102393562 11 + TSS region transcription start site region 105219
Tssr105220 11 102393582 to 102393589 7 + TSS region transcription start site region 105220
Cpgi3920 11 102399249 to 102400233 984 CpG island CpG island 3920
Tssr105221 11 102399815 to 102399826 11 + TSS region transcription start site region 105221
Tssr105222 11 102399829 to 102399842 13 + TSS region transcription start site region 105222
Slc25a39 11 102402985 to 102407946 4961 - protein coding gene solute carrier family 25, member 39
Tssr111063 11 102403282 to 102403296 14 - TSS region transcription start site region 111063
Mir6930 11 102404920 to 102404987 67 - miRNA gene microRNA 6930
Tssr111064 11 102406609 to 102406622 13 - TSS region transcription start site region 111064
Tssr111065 11 102406742 to 102406752 10 - TSS region transcription start site region 111065
Tssr111066 11 102406766 to 102406782 16 - TSS region transcription start site region 111066
Tssr111067 11 102406783 to 102406828 45 - TSS region transcription start site region 111067
Cpgi3921 11 102406972 to 102408114 1142 CpG island CpG island 3921
Tssr111068 11 102407437 to 102407448 11 - TSS region transcription start site region 111068
Tssr111069 11 102407455 to 102407528 73 - TSS region transcription start site region 111069
Tssr105223 11 102407613 to 102407632 19 + TSS region transcription start site region 105223
Tssr105224 11 102407719 to 102407733 14 + TSS region transcription start site region 105224
Tssr111070 11 102407857 to 102407895 38 - TSS region transcription start site region 111070
Tssr111071 11 102407899 to 102407913 14 - TSS region transcription start site region 111071
Tssr111072 11 102407922 to 102407951 29 - TSS region transcription start site region 111072
Cpgi3922 11 102408292 to 102408811 519 CpG island CpG island 3922
Tssr111073 11 102408457 to 102408473 16 - TSS region transcription start site region 111073