Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:80397888-80608107

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mbd3 10 80392539 to 80399531 6992 - protein coding gene methyl-CpG binding domain protein 3
Tssr98442 10 80398273 to 80398277 4 - TSS region transcription start site region 98442
Cpgi1878 10 80398621 to 80400233 1612 CpG island CpG island 1878
Tssr94569 10 80398966 to 80399035 69 + TSS region transcription start site region 94569
Tssr94570 10 80399037 to 80399049 12 + TSS region transcription start site region 94570
Tssr98443 10 80399344 to 80399384 40 - TSS region transcription start site region 98443
Tssr98444 10 80399389 to 80399428 39 - TSS region transcription start site region 98444
Tssr98445 10 80399430 to 80399476 46 - TSS region transcription start site region 98445
Tssr98446 10 80399478 to 80399516 38 - TSS region transcription start site region 98446
Tssr98447 10 80399532 to 80399547 15 - TSS region transcription start site region 98447
Tssr98448 10 80399552 to 80399563 11 - TSS region transcription start site region 98448
Tssr94571 10 80399822 to 80399848 26 + TSS region transcription start site region 94571
3300002P09Rik 10 80400644 to 80401674 1030 unclassified gene RIKEN cDNA 3300002P09 gene
Uqcr11 10 80402997 to 80406821 3824 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit XI
Cpgi1879 10 80406239 to 80407027 788 CpG island CpG island 1879
Tssr98449 10 80406792 to 80406809 17 - TSS region transcription start site region 98449
Tssr98450 10 80406811 to 80406819 8 - TSS region transcription start site region 98450
Tcf3 10 80409514 to 80433647 24133 - protein coding gene transcription factor 3
Cpgi1880 10 80412582 to 80413338 756 CpG island CpG island 1880
Tssr98451 10 80412708 to 80412720 12 - TSS region transcription start site region 98451
D10Mit23 10 80414634 to 80414737 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 23
Tssr98452 10 80416632 to 80416645 13 - TSS region transcription start site region 98452
Tssr98453 10 80417386 to 80417418 32 - TSS region transcription start site region 98453
Tssr98454 10 80417480 to 80417485 5 - TSS region transcription start site region 98454
Tssr98455 10 80419551 to 80419562 11 - TSS region transcription start site region 98455
Tssr98456 10 80419683 to 80419700 17 - TSS region transcription start site region 98456
Tssr98457 10 80421847 to 80421876 29 - TSS region transcription start site region 98457
Cpgi1881 10 80432812 to 80434253 1441 CpG island CpG island 1881
Tssr98458 10 80433384 to 80433418 34 - TSS region transcription start site region 98458
Tssr98459 10 80433583 to 80433594 11 - TSS region transcription start site region 98459
Tssr98460 10 80433602 to 80433613 11 - TSS region transcription start site region 98460
Tssr98461 10 80433615 to 80433655 40 - TSS region transcription start site region 98461
Tssr98462 10 80433945 to 80434001 56 - TSS region transcription start site region 98462
Cpgi1882 10 80446277 to 80446724 447 CpG island CpG island 1882
D10Mit21 10 80470562 to 80470690 128 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 21
Gm40716 10 80471409 to 80475380 3971 - lncRNA gene predicted gene, 40716
Cpgi1883 10 80471673 to 80472214 541 CpG island CpG island 1883
Cpgi1884 10 80474868 to 80475962 1094 CpG island CpG island 1884
Gm25044 10 80476352 to 80476455 103 + snRNA gene predicted gene, 25044
Cpgi1885 10 80490140 to 80491718 1578 CpG island CpG island 1885
Cpgi1886 10 80494514 to 80496796 2282 CpG island CpG island 1886
Tssr94572 10 80494855 to 80494873 18 + TSS region transcription start site region 94572
Onecut3 10 80494906 to 80517266 22360 + protein coding gene one cut domain, family member 3
Cpgi1887 10 80502888 to 80503107 219 CpG island CpG island 1887
Cpgi1888 10 80503529 to 80503798 269 CpG island CpG island 1888
2610034O05Rik 10 80508769 to 80509623 854 + unclassified gene RIKEN cDNA 2610034O05 gene
Cpgi1889 10 80513890 to 80514200 310 CpG island CpG island 1889
Atp8b3 10 80519584 to 80539124 19540 - protein coding gene ATPase, class I, type 8B, member 3
Tssr98463 10 80520271 to 80520286 15 - TSS region transcription start site region 98463
Tssr98464 10 80522106 to 80522110 4 - TSS region transcription start site region 98464
Cpgi1890 10 80526641 to 80526888 247 CpG island CpG island 1890
Cpgi1891 10 80535321 to 80535546 225 CpG island CpG island 1891
Cpgi1892 10 80536237 to 80536556 319 CpG island CpG island 1892
Cpgi1893 10 80538933 to 80539368 435 CpG island CpG island 1893
Tssr98465 10 80539082 to 80539103 21 - TSS region transcription start site region 98465
Tssr98466 10 80539107 to 80539129 22 - TSS region transcription start site region 98466
Rexo1 10 80540922 to 80561560 20638 - protein coding gene REX1, RNA exonuclease 1
Tssr98467 10 80546658 to 80546672 14 - TSS region transcription start site region 98467
Tssr98468 10 80546778 to 80546835 57 - TSS region transcription start site region 98468
Tssr94573 10 80546907 to 80546914 7 + TSS region transcription start site region 94573
Gm31057 10 80547494 to 80555297 7803 + lncRNA gene predicted gene, 31057
Tssr98469 10 80548713 to 80548725 12 - TSS region transcription start site region 98469
Cpgi1894 10 80560732 to 80561946 1214 CpG island CpG island 1894
Tssr98470 10 80561528 to 80561557 29 - TSS region transcription start site region 98470
Klf16 10 80567121 to 80577296 10175 - protein coding gene Kruppel-like factor 16
Tssr98471 10 80567907 to 80567908 1 - TSS region transcription start site region 98471
Cpgi1895 10 80571137 to 80571459 322 CpG island CpG island 1895
Cpgi1896 10 80575908 to 80578692 2784 CpG island CpG island 1896
Tssr98472 10 80577255 to 80577274 19 - TSS region transcription start site region 98472
Tssr98473 10 80577285 to 80577327 42 - TSS region transcription start site region 98473
Gm26710 10 80578647 to 80580677 2030 + lincRNA gene predicted gene, 26710
Abhd17a 10 80583654 to 80590341 6687 - protein coding gene abhydrolase domain containing 17A
Cpgi1897 10 80583892 to 80584270 378 CpG island CpG island 1897
Cpgi1898 10 80586507 to 80587249 742 CpG island CpG island 1898
Tssr98474 10 80586548 to 80586587 39 - TSS region transcription start site region 98474
Tssr98475 10 80587297 to 80587316 19 - TSS region transcription start site region 98475
Gm29093 10 80587965 to 80589790 1825 - sense intronic lncRNA gene predicted gene 29093
Tssr94574 10 80589381 to 80589387 6 + TSS region transcription start site region 94574
Cpgi1899 10 80589730 to 80590702 972 CpG island CpG island 1899
Tssr98476 10 80590292 to 80590329 37 - TSS region transcription start site region 98476
Cpgi1900 10 80602628 to 80603528 900 CpG island CpG island 1900
Tssr94575 10 80602865 to 80602904 39 + TSS region transcription start site region 94575
Adat3 10 80602880 to 80607654 4774 + protein coding gene adenosine deaminase, tRNA-specific 3
Scamp4 10 80602882 to 80615783 12901 + protein coding gene secretory carrier membrane protein 4
Tssr94576 10 80602905 to 80602912 7 + TSS region transcription start site region 94576
Tssr94577 10 80603201 to 80603259 58 + TSS region transcription start site region 94577
Tssr94578 10 80603282 to 80603297 15 + TSS region transcription start site region 94578
Gm49322 10 80606021 to 80615784 9763 + protein coding gene predicted gene, 49322
Tssr94579 10 80606570 to 80606601 31 + TSS region transcription start site region 94579