Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:61292842-61473823

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prf1 10 61297546 to 61304263 6717 + protein coding gene perforin 1 (pore forming protein)
Tssr93658 10 61297728 to 61297739 11 + TSS region transcription start site region 93658
Tssr93659 10 61297749 to 61297788 39 + TSS region transcription start site region 93659
Tssr93660 10 61297799 to 61297808 9 + TSS region transcription start site region 93660
Tssr93661 10 61297809 to 61297824 15 + TSS region transcription start site region 93661
Tssr93662 10 61309802 to 61309808 6 + TSS region transcription start site region 93662
Rpl27a-ps1 10 61309830 to 61310277 447 + pseudogene ribosomal protein L27A, pseudogene 1
Pald1 10 61319656 to 61383530 63874 - protein coding gene phosphatase domain containing, paladin 1
D10Mit48 10 61333715 to 61333893 178 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 48
Tssr3215 10 61352006 to 61352008 2 + TSS region transcription start site region 3215
Gm48077 10 61359666 to 61361407 1741 + unclassified gene predicted gene, 48077
Gm48074 10 61379414 to 61381048 1634 - unclassified gene predicted gene, 48074
Cpgi1605 10 61382842 to 61383823 981 CpG island CpG island 1605
Tssr97759 10 61383332 to 61383372 40 - TSS region transcription start site region 97759
Tssr97760 10 61383374 to 61383391 17 - TSS region transcription start site region 97760
Tssr3216 10 61383450 to 61383502 52 - TSS region transcription start site region 3216
Tssr97761 10 61415607 to 61415632 25 - TSS region transcription start site region 97761
Tssr93663 10 61416279 to 61416300 21 + TSS region transcription start site region 93663
Tssr93664 10 61416530 to 61416545 15 + TSS region transcription start site region 93664
Tssr97762 10 61416700 to 61416707 7 - TSS region transcription start site region 97762
Nodal 10 61417972 to 61425337 7365 + protein coding gene nodal
Cpgi1606 10 61418208 to 61419408 1200 CpG island CpG island 1606
Tssr93665 10 61418283 to 61418289 6 + TSS region transcription start site region 93665
D10Mit112.1 10 61424705 to 61424899 194 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.1
D10Mit112 10 61424897 to 61425027 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112
D10Mit112.2 10 61425078 to 61425193 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 112.2
Eif4ebp2 10 61428491 to 61452661 24170 - protein coding gene eukaryotic translation initiation factor 4E binding protein 2
Tssr97763 10 61432711 to 61432746 35 - TSS region transcription start site region 97763
Tssr97764 10 61432768 to 61432821 53 - TSS region transcription start site region 97764
Tssr97765 10 61432933 to 61432948 15 - TSS region transcription start site region 97765
Tssr97766 10 61433215 to 61433249 34 - TSS region transcription start site region 97766
Tssr97767 10 61435036 to 61435065 29 - TSS region transcription start site region 97767
A130019P10Rik 10 61440942 to 61442412 1470 unclassified gene RIKEN cDNA A130019P10 gene
Gm48086 10 61446902 to 61450717 3815 - sense intronic lncRNA gene predicted gene, 48086
Cpgi1607 10 61451959 to 61453093 1134 CpG island CpG island 1607
Tssr97768 10 61452418 to 61452434 16 - TSS region transcription start site region 97768
Tssr97769 10 61452772 to 61452813 41 - TSS region transcription start site region 97769
D830039M14Rik 10 61473576 to 61476937 3361 - antisense lncRNA gene RIKEN cDNA D830039M14 gene