Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:31258611-33271539

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1424 10 31313201 to 31314020 819 CpG island CpG island 1424
Hddc2 10 31313367 to 31328086 14719 + protein coding gene HD domain containing 2
Tssr92880 10 31313375 to 31313420 45 + TSS region transcription start site region 92880
Tssr92881 10 31313431 to 31313442 11 + TSS region transcription start site region 92881
Tssr92882 10 31313447 to 31313452 5 + TSS region transcription start site region 92882
n-R5s76 10 31317169 to 31317281 112 - rRNA gene nuclear encoded rRNA 5S 76
Gm48865 10 31321418 to 31324022 2604 + unclassified gene predicted gene, 48865
Tpd52l1 10 31332376 to 31445958 113582 - protein coding gene tumor protein D52-like 1
D730042M07Rik 10 31372419 to 31373009 590 unclassified gene RIKEN cDNA D730042M07 gene
Tssr97201 10 31390453 to 31390459 6 - TSS region transcription start site region 97201
Tssr92883 10 31391348 to 31391349 1 + TSS region transcription start site region 92883
Gm48094 10 31398923 to 31414401 15478 + antisense lncRNA gene predicted gene, 48094
Supt4b 10 31413815 to 31414165 350 - protein coding gene suppressor of Ty 4B
Gm48092 10 31423529 to 31426090 2561 - unclassified gene predicted gene, 48092
Gm48093 10 31429993 to 31433506 3513 + antisense lncRNA gene predicted gene, 48093
D10Mit284 10 31443581 to 31443690 109 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 284
Cpgi1425 10 31445195 to 31446178 983 CpG island CpG island 1425
Tssr97202 10 31445802 to 31445848 46 - TSS region transcription start site region 97202
Tssr97203 10 31445849 to 31445894 45 - TSS region transcription start site region 97203
Tssr97204 10 31445943 to 31445967 24 - TSS region transcription start site region 97204
Gm47687 10 31448257 to 31452082 3825 - unclassified gene predicted gene, 47687
3110035C09Rik 10 31499858 to 31501526 1668 unclassified gene RIKEN cDNA 3110035C09 gene
Rnf217 10 31501887 to 31609725 107838 - protein coding gene ring finger protein 217
D10Mit155 10 31550768 to 31550915 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 155
Gm47693 10 31555920 to 31557440 1520 - unclassified gene predicted gene, 47693
Gm7909 10 31574400 to 31575013 613 - pseudogene predicted gene 7909
Tssr97205 10 31599796 to 31599800 4 - TSS region transcription start site region 97205
Cpgi1426 10 31608300 to 31610037 1737 CpG island CpG island 1426
Tssr97206 10 31608613 to 31608630 17 - TSS region transcription start site region 97206
Tssr97207 10 31609638 to 31609705 67 - TSS region transcription start site region 97207
Tssr97208 10 31609718 to 31609732 14 - TSS region transcription start site region 97208
Tssr97209 10 31609818 to 31609870 52 - TSS region transcription start site region 97209
Gm8793 10 31639158 to 31640460 1302 + pseudogene predicted gene 8793
Nkain2 10 31689310 to 32890462 1201152 - protein coding gene Na+/K+ transporting ATPase interacting 2
Tssr97210 10 31690582 to 31690587 5 - TSS region transcription start site region 97210
Gm47704 10 31867912 to 31871101 3189 + unclassified gene predicted gene, 47704
Gm18189 10 31971719 to 31973669 1950 - pseudogene predicted gene, 18189
Tssr92884 10 31976743 to 31976752 9 + TSS region transcription start site region 92884
Tssr97211 10 32051203 to 32051209 6 - TSS region transcription start site region 97211
2900052O17Rik 10 32097536 to 32098348 812 unclassified gene RIKEN cDNA 2900052O17 gene
A230081H15Rik 10 32263611 to 32266539 2928 - unclassified gene Riken cDNA A230081H15 gene
C030006N10Rik 10 32279177 to 32279693 516 - unclassified gene RIKEN cDNA C030006N10 gene
Gm18704 10 32369555 to 32370292 737 - pseudogene predicted gene, 18704
D10Mit191 10 32462429 to 32462725 296 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 191
Tssr97212 10 32478762 to 32478765 3 - TSS region transcription start site region 97212
Gm47700 10 32484490 to 32486999 2509 - unclassified gene predicted gene, 47700
Tssr97213 10 32552514 to 32552517 3 - TSS region transcription start site region 97213
Tssr97214 10 32578337 to 32578342 5 - TSS region transcription start site region 97214
Gm47702 10 32638831 to 32639486 655 - unclassified gene predicted gene, 47702
2900009I19Rik 10 32660805 to 32661339 534 unclassified gene RIKEN cDNA 2900009I19 gene
Tssr97215 10 32755624 to 32755628 4 - TSS region transcription start site region 97215
Tssr97216 10 32889674 to 32889727 53 - TSS region transcription start site region 97216
Cpgi1427 10 32889690 to 32890739 1049 CpG island CpG island 1427
Tssr92885 10 32889809 to 32889821 12 + TSS region transcription start site region 92885
Tssr97217 10 32889903 to 32889919 16 - TSS region transcription start site region 97217
Tssr97218 10 32889971 to 32889996 25 - TSS region transcription start site region 97218
Tssr97219 10 32890001 to 32890027 26 - TSS region transcription start site region 97219
Tssr97220 10 32890080 to 32890172 92 - TSS region transcription start site region 97220
Gm47823 10 32917208 to 32939685 22477 - lincRNA gene predicted gene, 47823
Tssr92886 10 33083140 to 33083154 14 + TSS region transcription start site region 92886
Tssr92887 10 33083157 to 33083197 40 + TSS region transcription start site region 92887
Tssr92888 10 33083203 to 33083214 11 + TSS region transcription start site region 92888
Tssr92889 10 33083225 to 33083234 9 + TSS region transcription start site region 92889
Tssr92890 10 33083244 to 33083264 20 + TSS region transcription start site region 92890
Tssr92891 10 33083476 to 33083567 91 + TSS region transcription start site region 92891
Trdn 10 33083483 to 33476709 393226 + protein coding gene triadin
Tssr92892 10 33091412 to 33091417 5 + TSS region transcription start site region 92892
Tssr92893 10 33139112 to 33139124 12 + TSS region transcription start site region 92893
Tssr92894 10 33139192 to 33139212 20 + TSS region transcription start site region 92894
Tssr92895 10 33157065 to 33157112 47 + TSS region transcription start site region 92895
Tssr92896 10 33157127 to 33157141 14 + TSS region transcription start site region 92896
Tssr92897 10 33158244 to 33158250 6 + TSS region transcription start site region 92897
Gm47831 10 33171710 to 33172486 776 + unclassified gene predicted gene, 47831
Tssr92898 10 33175786 to 33175801 15 + TSS region transcription start site region 92898
Tssr92899 10 33195946 to 33195957 11 + TSS region transcription start site region 92899
Tssr92900 10 33195969 to 33195976 7 + TSS region transcription start site region 92900
Tssr92901 10 33196015 to 33196026 11 + TSS region transcription start site region 92901
Tssr92902 10 33197362 to 33197369 7 + TSS region transcription start site region 92902
Tssr92903 10 33197717 to 33197729 12 + TSS region transcription start site region 92903
Tssr92904 10 33197769 to 33197783 14 + TSS region transcription start site region 92904
Tssr92905 10 33197824 to 33197840 16 + TSS region transcription start site region 92905
Tssr97221 10 33205644 to 33205665 21 - TSS region transcription start site region 97221
Tssr97222 10 33206547 to 33206580 33 - TSS region transcription start site region 97222
Tssr97223 10 33206632 to 33206635 3 - TSS region transcription start site region 97223
Gm47845 10 33211085 to 33211632 547 + pseudogene predicted gene, 47845
Tssr97224 10 33211353 to 33211357 4 - TSS region transcription start site region 97224
D830005E20Rik 10 33222345 to 33256357 34012 - antisense lncRNA gene RIKEN cDNA D830005E20 gene
Tssr92906 10 33233845 to 33233877 32 + TSS region transcription start site region 92906
Tssr92907 10 33233897 to 33233907 10 + TSS region transcription start site region 92907
Tssr97225 10 33256231 to 33256244 13 - TSS region transcription start site region 97225
Tssr97226 10 33256344 to 33256362 18 - TSS region transcription start site region 97226
Tssr97227 10 33256369 to 33256382 13 - TSS region transcription start site region 97227
Tssr92908 10 33256512 to 33256522 10 + TSS region transcription start site region 92908
Tssr92909 10 33256525 to 33256540 15 + TSS region transcription start site region 92909
Tssr92910 10 33256541 to 33256564 23 + TSS region transcription start site region 92910
Tssr92911 10 33256579 to 33256611 32 + TSS region transcription start site region 92911
Tssr92912 10 33256929 to 33256930 1 + TSS region transcription start site region 92912
Tssr92913 10 33256942 to 33256968 26 + TSS region transcription start site region 92913
Tssr92914 10 33257095 to 33257110 15 + TSS region transcription start site region 92914