Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127439371-127639378

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
R3hdm2 10 127380332 to 127499384 119052 + protein coding gene R3H domain containing 2
Tssr96209 10 127452721 to 127452743 22 + TSS region transcription start site region 96209
Tssr96210 10 127471775 to 127471795 20 + TSS region transcription start site region 96210
Tssr96211 10 127471809 to 127471819 10 + TSS region transcription start site region 96211
Tssr96212 10 127471828 to 127471837 9 + TSS region transcription start site region 96212
Tssr96213 10 127476521 to 127476532 11 + TSS region transcription start site region 96213
Tssr96214 10 127476574 to 127476593 19 + TSS region transcription start site region 96214
Tssr96215 10 127481647 to 127481672 25 + TSS region transcription start site region 96215
Tssr96216 10 127481690 to 127481699 9 + TSS region transcription start site region 96216
Tssr96217 10 127487811 to 127487831 20 + TSS region transcription start site region 96217
Tssr96218 10 127493181 to 127493208 27 + TSS region transcription start site region 96218
Tssr96219 10 127498853 to 127498888 35 + TSS region transcription start site region 96219
Tssr96220 10 127501672 to 127501706 34 + TSS region transcription start site region 96220
Stac3 10 127501686 to 127508823 7137 + protein coding gene SH3 and cysteine rich domain 3
Tssr96221 10 127501707 to 127501726 19 + TSS region transcription start site region 96221
Cpgi2359 10 127508002 to 127508326 324 CpG island CpG island 2359
Cpgi2360 10 127509244 to 127509596 352 CpG island CpG island 2360
Cpgi2361 10 127511541 to 127512381 840 CpG island CpG island 2361
Cpgi2362 10 127512697 to 127513257 560 CpG island CpG island 2362
Tssr96222 10 127514951 to 127514979 28 + TSS region transcription start site region 96222
Ndufa4l2 10 127514967 to 127517154 2187 + protein coding gene Ndufa4, mitochondrial complex associated like 2
Tssr96223 10 127515160 to 127515168 8 + TSS region transcription start site region 96223
Tssr96224 10 127515718 to 127515755 37 + TSS region transcription start site region 96224
Tssr96225 10 127515777 to 127515789 12 + TSS region transcription start site region 96225
Shmt2 10 127517123 to 127522444 5321 - protein coding gene serine hydroxymethyltransferase 2 (mitochondrial)
Tssr99780 10 127518922 to 127518935 13 - TSS region transcription start site region 99780
Tssr99781 10 127520776 to 127520784 8 - TSS region transcription start site region 99781
Tssr99782 10 127521124 to 127521134 10 - TSS region transcription start site region 99782
Cpgi2363 10 127521928 to 127522461 533 CpG island CpG island 2363
Tssr99783 10 127522339 to 127522356 17 - TSS region transcription start site region 99783
Tssr99784 10 127522364 to 127522423 59 - TSS region transcription start site region 99784
Tssr99785 10 127522428 to 127522454 26 - TSS region transcription start site region 99785
Cpgi2364 10 127524841 to 127525180 339 CpG island CpG island 2364
Nxph4 10 127525473 to 127534559 9086 - protein coding gene neurexophilin 4
Cpgi2365 10 127525829 to 127527016 1187 CpG island CpG island 2365
Tssr99786 10 127525846 to 127525860 14 - TSS region transcription start site region 99786
Tssr99787 10 127531522 to 127531533 11 - TSS region transcription start site region 99787
Cpgi2366 10 127533657 to 127535470 1813 CpG island CpG island 2366
Tssr99788 10 127534540 to 127534566 26 - TSS region transcription start site region 99788
Tssr99789 10 127534570 to 127534594 24 - TSS region transcription start site region 99789
Lrp1 10 127538161 to 127621148 82987 - protein coding gene low density lipoprotein receptor-related protein 1
Tssr99790 10 127539371 to 127539378 7 - TSS region transcription start site region 99790
Tssr99791 10 127563813 to 127563821 8 - TSS region transcription start site region 99791
Tssr99792 10 127563876 to 127563883 7 - TSS region transcription start site region 99792
Cpgi2367 10 127566569 to 127566912 343 CpG island CpG island 2367
Tssr99793 10 127589606 to 127589614 8 - TSS region transcription start site region 99793
Tssr99794 10 127594388 to 127594438 50 - TSS region transcription start site region 99794
Tssr99795 10 127594559 to 127594591 32 - TSS region transcription start site region 99795
Tssr99796 10 127595431 to 127595445 14 - TSS region transcription start site region 99796
Tssr99797 10 127595505 to 127595531 26 - TSS region transcription start site region 99797
Tssr99798 10 127595575 to 127595586 11 - TSS region transcription start site region 99798
Tssr96226 10 127596210 to 127596248 38 + TSS region transcription start site region 96226
Gm16217 10 127596548 to 127597870 1322 + antisense lncRNA gene predicted gene 16217
Tssr99799 10 127607118 to 127607164 46 - TSS region transcription start site region 99799
Tssr99800 10 127609839 to 127609846 7 - TSS region transcription start site region 99800
Tssr99801 10 127620668 to 127620717 49 - TSS region transcription start site region 99801
Tssr99802 10 127620942 to 127620943 1 - TSS region transcription start site region 99802
Tssr99803 10 127620960 to 127621031 71 - TSS region transcription start site region 99803
Tssr99804 10 127621107 to 127621166 59 - TSS region transcription start site region 99804
Tssr99805 10 127621242 to 127621258 16 - TSS region transcription start site region 99805
Cpgi2368 10 127621294 to 127622282 988 CpG island CpG island 2368
Tssr96227 10 127621298 to 127621323 25 + TSS region transcription start site region 96227
Tssr99806 10 127621651 to 127621682 31 - TSS region transcription start site region 99806
Tssr96228 10 127621780 to 127621801 21 + TSS region transcription start site region 96228
Gm40802 10 127634677 to 127641204 6527 + lncRNA gene predicted gene, 40802
Tssr96229 10 127634695 to 127634708 13 + TSS region transcription start site region 96229
Gm48815 10 127635913 to 127636387 474 - pseudogene predicted gene, 48815