Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:111343378-111954812

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40761 10 111337124 to 111347185 10061 + lincRNA gene predicted gene, 40761
Gm30145 10 111366704 to 111378465 11761 - lncRNA gene predicted gene, 30145
Cpgi2194 10 111472748 to 111473939 1191 CpG island CpG island 2194
Tssr95759 10 111473186 to 111473201 15 + TSS region transcription start site region 95759
Tssr95760 10 111473220 to 111473242 22 + TSS region transcription start site region 95760
Nap1l1 10 111473223 to 111498150 24927 + protein coding gene nucleosome assembly protein 1-like 1
Tssr95761 10 111473253 to 111473262 9 + TSS region transcription start site region 95761
Tssr3351 10 111473266 to 111473267 1 + TSS region transcription start site region 3351
Tssr95762 10 111473962 to 111473966 4 + TSS region transcription start site region 95762
Gm25117 10 111481493 to 111481636 143 + snoRNA gene predicted gene, 25117
D10Ertd284e 10 111484291 to 111484499 208 DNA segment DNA segment, Chr 10, ERATO Doi 284, expressed
Tssr95763 10 111485347 to 111485358 11 + TSS region transcription start site region 95763
Gm5176 10 111500788 to 111501345 557 + pseudogene predicted gene 5176
Cpgi2195 10 111506017 to 111507867 1850 CpG island CpG island 2195
Phlda1 10 111506286 to 111508645 2359 + protein coding gene pleckstrin homology like domain, family A, member 1
Tssr95764 10 111506395 to 111506419 24 + TSS region transcription start site region 95764
Tssr95765 10 111506428 to 111506435 7 + TSS region transcription start site region 95765
Tssr95766 10 111506542 to 111506563 21 + TSS region transcription start site region 95766
Gm28592 10 111506575 to 111507662 1087 - lincRNA gene predicted gene 28592
Tssr95767 10 111506939 to 111506962 23 + TSS region transcription start site region 95767
Tssr99267 10 111507316 to 111507338 22 - TSS region transcription start site region 99267
Tssr99268 10 111507373 to 111507397 24 - TSS region transcription start site region 99268
Tssr99269 10 111516962 to 111516982 20 - TSS region transcription start site region 99269
Gm40762 10 111524069 to 111529990 5921 - lncRNA gene predicted gene, 40762
Tssr95768 10 111553991 to 111554025 34 + TSS region transcription start site region 95768
Gm30193 10 111569880 to 111573862 3982 - lncRNA gene predicted gene, 30193
4933440J02Rik 10 111586719 to 111594273 7554 - lincRNA gene RIKEN cDNA 4933440J02 gene
Tssr95769 10 111595077 to 111595092 15 + TSS region transcription start site region 95769
Tssr95770 10 111595873 to 111595880 7 + TSS region transcription start site region 95770
Tssr95771 10 111595892 to 111595905 13 + TSS region transcription start site region 95771
Tssr95772 10 111595908 to 111595918 10 + TSS region transcription start site region 95772
Tssr95773 10 111595923 to 111595935 12 + TSS region transcription start site region 95773
Tssr95774 10 111595958 to 111595971 13 + TSS region transcription start site region 95774
Gm30262 10 111599177 to 111611338 12161 + lincRNA gene predicted gene, 30262
Tssr95775 10 111608603 to 111608635 32 + TSS region transcription start site region 95775
Gm40763 10 111631429 to 111636499 5070 - lncRNA gene predicted gene, 40763
Gm47864 10 111648378 to 111649812 1434 - pseudogene predicted gene, 47864
Gm30624 10 111685035 to 111731355 46320 + lincRNA gene predicted gene, 30624
Tssr95776 10 111725128 to 111725133 5 + TSS region transcription start site region 95776
D10Mit73 10 111732321 to 111732414 93 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 73
Hylaq3 10 111732321 to 118150744 6418423 QTL Hyperlocomotor activity related QTL 3
Tmevp2 10 111732414 to 92894079 -18838335 QTL Theiler's murine encephalomyelitis virus persistence 2
Tssr3352 10 111754034 to 111754037 3 - TSS region transcription start site region 3352
Gm47865 10 111757258 to 111799853 42595 - lincRNA gene predicted gene, 47865
Gm46193 10 111767778 to 111768141 363 + pseudogene predicted gene, 46193
Cpgi2196 10 111782491 to 111782742 251 CpG island CpG island 2196
Tssr99270 10 111799786 to 111799806 20 - TSS region transcription start site region 99270
Tssr99271 10 111799858 to 111799881 23 - TSS region transcription start site region 99271
Gm19005 10 111806388 to 111807229 841 - pseudogene predicted gene, 19005
Gm37189 10 111810780 to 111811077 297 + unclassified gene predicted gene, 37189
Gm47866 10 111829325 to 111829944 619 - pseudogene predicted gene, 47866
Gm20758 10 111854521 to 111874376 19855 - lincRNA gene predicted gene, 20758
Gm47880 10 111889014 to 111889818 804 + pseudogene predicted gene, 47880