Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:60343698-60883803

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi302 1 60342933 to 60343833 900 CpG island CpG island 302
Cyp20a1 1 60343323 to 60388060 44737 + protein coding gene cytochrome P450, family 20, subfamily a, polypeptide 1
6030460B20Rik 1 60353119 to 60354176 1057 + unclassified gene RIKEN cDNA 6030460B20 gene
Cpgi303 1 60408994 to 60410355 1361 CpG island CpG island 303
Tssr6924 1 60409544 to 60409600 56 + TSS region transcription start site region 6924
Tssr6925 1 60409612 to 60409648 36 + TSS region transcription start site region 6925
Abi2 1 60409619 to 60481158 71539 + protein coding gene abl-interactor 2
Tssr6926 1 60409660 to 60409754 94 + TSS region transcription start site region 6926
Tssr6927 1 60409773 to 60409802 29 + TSS region transcription start site region 6927
Raph1 1 60482292 to 60567104 84812 - protein coding gene Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
Tssr11851 1 60486618 to 60486652 34 - TSS region transcription start site region 11851
Tssr11852 1 60489818 to 60489835 17 - TSS region transcription start site region 11852
Tssr6928 1 60490201 to 60490220 19 + TSS region transcription start site region 6928
Tssr11853 1 60498508 to 60498529 21 - TSS region transcription start site region 11853
Tssr11854 1 60504792 to 60504801 9 - TSS region transcription start site region 11854
Tssr11855 1 60517153 to 60517158 5 - TSS region transcription start site region 11855
C730045O03Rik 1 60520813 to 60522290 1477 unclassified gene RIKEN cDNA C730045O03 gene
Gm11575 1 60522839 to 60523066 227 - pseudogene predicted gene 11575
D1Mit479 1 60527184 to 60527286 102 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 479
Gm11576 1 60537020 to 60537436 416 + pseudogene predicted gene 11576
Cpgi304 1 60566001 to 60567526 1525 CpG island CpG island 304
Tssr11856 1 60566708 to 60566756 48 - TSS region transcription start site region 11856
Tssr11857 1 60566810 to 60566836 26 - TSS region transcription start site region 11857
Tssr11858 1 60567077 to 60567111 34 - TSS region transcription start site region 11858
Gm11578 1 60592251 to 60592709 458 - pseudogene predicted gene 11578
Gm38388 1 60594807 to 60596236 1429 - lncRNA gene predicted gene, 38388
Tssr6929 1 60596658 to 60596661 3 + TSS region transcription start site region 6929
Tssr6930 1 60609201 to 60609218 17 + TSS region transcription start site region 6930
Tssr6931 1 60609222 to 60609229 7 + TSS region transcription start site region 6931
Gm23762 1 60613698 to 60613803 105 - miRNA gene predicted gene, 23762
Gm11577 1 60700872 to 60701937 1065 + pseudogene predicted gene 11577
D1Mit126 1 60703618 to 60703734 116 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 126
Tssr6932 1 60703913 to 60703920 7 + TSS region transcription start site region 6932
Eif4a-ps4 1 60703932 to 60705149 1217 + pseudogene eukaryotic translation initiation factor 4A, pseudogene 4
Tssr6933 1 60703975 to 60704014 39 + TSS region transcription start site region 6933
Tssr6934 1 60704985 to 60705000 15 + TSS region transcription start site region 6934
Tssr6935 1 60705231 to 60705249 18 + TSS region transcription start site region 6935
Tssr6936 1 60705287 to 60705295 8 + TSS region transcription start site region 6936
Tssr6937 1 60714053 to 60714057 4 + TSS region transcription start site region 6937
Tssr6938 1 60746367 to 60746427 60 + TSS region transcription start site region 6938
Cd28 1 60746388 to 60773359 26971 + protein coding gene CD28 antigen
Tssr6939 1 60746429 to 60746477 48 + TSS region transcription start site region 6939
Tssr6940 1 60746485 to 60746496 11 + TSS region transcription start site region 6940
Tssr6941 1 60751716 to 60751719 3 + TSS region transcription start site region 6941
Tssr6942 1 60755475 to 60755479 4 + TSS region transcription start site region 6942
Cpgi305 1 60763087 to 60763289 202 CpG island CpG island 305
Tssr6943 1 60768208 to 60768212 4 + TSS region transcription start site region 6943
Tssr6944 1 60771613 to 60771616 3 + TSS region transcription start site region 6944
Gm11579 1 60776665 to 60781834 5169 - lincRNA gene predicted gene 11579
Tssr6945 1 60778743 to 60778748 5 + TSS region transcription start site region 6945
2310016D23Rik 1 60778843 to 60803790 24947 + lincRNA gene RIKEN cDNA 2310016D23 gene
Gm37198 1 60779352 to 60781461 2109 + unclassified gene predicted gene, 37198
Tssr11859 1 60781686 to 60781735 49 - TSS region transcription start site region 11859
Tssr11860 1 60786449 to 60786452 3 - TSS region transcription start site region 11860
Gm11609 1 60792505 to 60793093 588 + pseudogene predicted gene 11609
Tssr6946 1 60807932 to 60807948 16 + TSS region transcription start site region 6946
Gm11581 1 60809116 to 60809942 826 + pseudogene predicted gene 11581
Tssr6947 1 60811510 to 60811512 2 + TSS region transcription start site region 6947
Tssr6948 1 60812229 to 60812241 12 + TSS region transcription start site region 6948
D1Mit249 1 60840267 to 60840414 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 249
Gm38137 1 60880338 to 60881738 1400 + lncRNA gene predicted gene, 38137