Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:38155393-38648333

32 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm5099	1	38144023 to 38159892	15869	+	lincRNA gene	predicted gene 5099
Aff3	1	38175393 to 38628333	452940	-	protein coding gene	AF4/FMR2 family, member 3
Cpgi174	1	38209955 to 38210526	571		CpG island	CpG island 174
Cpgi175	1	38218186 to 38218449	263		CpG island	CpG island 175
Gm16150	1	38235420 to 38246666	11246	+	antisense lncRNA gene	predicted gene 16150
Cpgi176	1	38239554 to 38239792	238		CpG island	CpG island 176
5330403D14Rik	1	38247931 to 38249269	1338		unclassified gene	RIKEN cDNA 5330403D14 gene
6030495B02Rik	1	38305465 to 38308429	2964		unclassified gene	RIKEN cDNA 6030495B02 gene
Gm16151	1	38307902 to 38311930	4028	+	antisense lncRNA gene	predicted gene 16151
Tssr11334	1	38320259 to 38320272	13	-	TSS region	transcription start site region 11334
Tssr11335	1	38321981 to 38321997	16	-	TSS region	transcription start site region 11335
2900002H24Rik	1	38322245 to 38322498	253		unclassified gene	RIKEN cDNA 2900002H24 gene
Cpgi177	1	38358854 to 38359432	578		CpG island	CpG island 177
Gm16152	1	38384949 to 38393974	9025	+	antisense lncRNA gene	predicted gene 16152
Tssr53	1	38393972 to 38393975	3	-	TSS region	transcription start site region 53
Tssr11336	1	38472450 to 38472453	3	-	TSS region	transcription start site region 11336
Gm34727	1	38487519 to 38488047	528	+	pseudogene	predicted gene, 34727
Tssr11337	1	38491806 to 38491810	4	-	TSS region	transcription start site region 11337
D1Dcr26	1	38528672 to 38528767	95		DNA segment	DNA Segment, Chr 1, Derry C. Roopenian 26
D1Dcr27	1	38541472 to 38541568	96		DNA segment	DNA Segment, Chr 1, Derry C. Roopenian 27
D1Mit321	1	38541478 to 38541608	130		DNA segment	DNA segment, Chr 1, Massachusetts Institute of Technology 321
2310050P20Rik	1	38554284 to 38556376	2092		unclassified gene	RIKEN cDNA 2310050P20 gene
Tssr11338	1	38603922 to 38603925	3	-	TSS region	transcription start site region 11338
Tssr11339	1	38615538 to 38615542	4	-	TSS region	transcription start site region 11339
Cpgi178	1	38626448 to 38628304	1856		CpG island	CpG island 178
Tssr11340	1	38627415 to 38627467	52	-	TSS region	transcription start site region 11340
Tssr11341	1	38627538 to 38627549	11	-	TSS region	transcription start site region 11341
Tssr11342	1	38627569 to 38627582	13	-	TSS region	transcription start site region 11342
Tssr11343	1	38627586 to 38627605	19	-	TSS region	transcription start site region 11343
Tssr11344	1	38628077 to 38628092	15	-	TSS region	transcription start site region 11344
Gm34596	1	38630667 to 38653368	22701	+	lncRNA gene	predicted gene, 34596
Tssr11345	1	38638631 to 38638633	2	-	TSS region	transcription start site region 11345